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extra/openmpi to 1.8.4-1.1

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Kevin Mihelich 2015-04-30 21:30:37 +00:00
parent 002149a899
commit 2036d98113
2 changed files with 278 additions and 5 deletions
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268
extra/openmpi/0001-Fortran-only-emit-real16-and-complex32-if-supported.patch Normal file
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@ -0,0 +1,268 @@
From 29a0d71a482d4a96d6ccc49bad575ae6da8bf893 Mon Sep 17 00:00:00 2001
From: Jeff Squyres <jsquyres@cisco.com>
Date: Tue, 6 Jan 2015 09:49:47 -0800
Subject: [PATCH] Fortran: only emit real16 and complex32 if supported
Fixes open-mpi/ompi-release#148. Thanks to @opoplawski for
identifying the issue.
---
ompi/include/Makefile.am | 6 ++++--
ompi/mpi/fortran/base/gen-mpi-sizeof.pl | 18 +++++++++++++++---
ompi/mpi/fortran/mpif-h/Makefile.am | 6 +++++-
ompi/mpi/fortran/mpif-h/profile/Makefile.am | 6 +++++-
ompi/mpi/fortran/use-mpi-f08/Makefile.am | 14 +++++++++++---
ompi/mpi/fortran/use-mpi-ignore-tkr/Makefile.am | 10 ++++++++--
ompi/mpi/fortran/use-mpi-tkr/Makefile.am | 10 +++++++---
7 files changed, 55 insertions(+), 15 deletions(-)
diff --git a/ompi/include/Makefile.am b/ompi/include/Makefile.am
index c38eb47..4db50fb 100644
--- a/ompi/include/Makefile.am
+++ b/ompi/include/Makefile.am
@@ -11,7 +11,7 @@
# All rights reserved.
# Copyright (c) 2006-2014 Cisco Systems, Inc. All rights reserved.
# Copyright (c) 2009-2011 Oak Ridge National Labs. All rights reserved.
-# Copyright (c) 2014 Research Organization for Information Science
+# Copyright (c) 2014-2015 Research Organization for Information Science
# and Technology (RIST). All rights reserved.
# $COPYRIGHT$
#
@@ -82,7 +82,9 @@ mpif-sizeof.h:
$(OMPI_V_GEN) $(sizeof_pl) \
--header=$@ --ierror=mandatory \
--maxrank=$(OMPI_FORTRAN_MAX_ARRAY_RANK) \
- --generate=$(OMPI_FORTRAN_BUILD_SIZEOF)
+ --generate=$(OMPI_FORTRAN_BUILD_SIZEOF) \
+ --real16=$(OMPI_HAVE_FORTRAN_REAL16) \
+ --complex32=$(OMPI_HAVE_FORTRAN_COMPLEX32)
if WANT_INSTALL_HEADERS
ompidir = $(ompiincludedir)
diff --git a/ompi/mpi/fortran/base/gen-mpi-sizeof.pl b/ompi/mpi/fortran/base/gen-mpi-sizeof.pl
index 797c42b..a422c9a 100755
--- a/ompi/mpi/fortran/base/gen-mpi-sizeof.pl
+++ b/ompi/mpi/fortran/base/gen-mpi-sizeof.pl
@@ -1,6 +1,8 @@
#!/usr/bin/env perl
#
# Copyright (c) 2014 Cisco Systems, Inc. All rights reserved.
+# Copyright (c) 2015 Research Organization for Information Science
+# and Technology (RIST). All rights reserved.
# $COPYRIGHT$
#
# Script to generate the overloaded MPI_SIZEOF interfaces and
@@ -30,17 +32,21 @@ my $ierror_arg;
my $maxrank_arg;
my $generate_arg;
my $mpi_arg;
+my $mpi_real16;
+my $mpi_complex32;
my $pmpi_arg;
my $help_arg = 0;
&Getopt::Long::Configure("bundling");
-my $ok = Getopt::Long::GetOptions("header=s" => \$header_arg,
+my $ok = Getopt::Long::GetOptions("complex32=i" => \$mpi_complex32,
+ "header=s" => \$header_arg,
"impl=s" => \$impl_arg,
"ierror=s" => \$ierror_arg,
"maxrank=s" => \$maxrank_arg,
"generate=i" => \$generate_arg,
"mpi" => \$mpi_arg,
"pmpi" => \$pmpi_arg,
+ "real16=i" => \$mpi_real16,
"help|h" => \$help_arg);
die "Must specify header and/or impl filenames to output"
@@ -54,6 +60,8 @@ die "max array rank must be >= 4 and <=15"
die "Must specify --pmpi and/or --mpi if --impl is specified"
if (defined($generate_arg) && $generate_arg &&
(defined($impl_arg) && !defined($mpi_arg) && !defined($pmpi_arg)));
+die "Must specify real16 and complex32"
+ if (!defined($mpi_real16) || !defined($mpi_complex32));
#############################################################################
@@ -141,8 +149,12 @@ for my $size (qw/8 16 32 64/) {
queue_sub("integer(int${size})", "int${size}", "int${size}");
}
for my $size (qw/32 64 128/) {
- queue_sub("real(real${size})", "real${size}", "real${size}");
- queue_sub("complex(real${size})", "complex${size}", "real${size}");
+ if ($size != 128 || $mpi_real16 == 1) {
+ queue_sub("real(real${size})", "real${size}", "real${size}");
+ }
+ if ($size != 128 || $mpi_complex32 == 1) {
+ queue_sub("complex(real${size})", "complex${size}", "real${size}");
+ }
}
#######################################################
diff --git a/ompi/mpi/fortran/mpif-h/Makefile.am b/ompi/mpi/fortran/mpif-h/Makefile.am
index b586f47..8d5330c 100644
--- a/ompi/mpi/fortran/mpif-h/Makefile.am
+++ b/ompi/mpi/fortran/mpif-h/Makefile.am
@@ -14,6 +14,8 @@
# Copyright (c) 2011-2013 Universite Bordeaux 1
# Copyright (c) 2013-2014 Los Alamos National Security, LLC. All rights
# reserved.
+# Copyright (c) 2015 Research Organization for Information Science
+# and Technology (RIST). All rights reserved.
# $COPYRIGHT$
#
# Additional copyrights may follow
@@ -135,7 +137,9 @@ sizeof_f.f90:
$(OMPI_V_GEN) $(sizeof_pl) \
--impl=$@ --ierror=mandatory --mpi \
--maxrank=$(OMPI_FORTRAN_MAX_ARRAY_RANK) \
- --generate=$(OMPI_FORTRAN_BUILD_SIZEOF)
+ --generate=$(OMPI_FORTRAN_BUILD_SIZEOF) \
+ --real16=$(OMPI_HAVE_FORTRAN_REAL16) \
+ --complex32=$(OMPI_HAVE_FORTRAN_COMPLEX32)
endif OMPI_BUILD_FORTRAN_MPIFH_BINDINGS
if BUILD_MPI_FORTRAN_MPIFH_BINDINGS_LAYER
diff --git a/ompi/mpi/fortran/mpif-h/profile/Makefile.am b/ompi/mpi/fortran/mpif-h/profile/Makefile.am
index 2abe58a..0d32e93 100644
--- a/ompi/mpi/fortran/mpif-h/profile/Makefile.am
+++ b/ompi/mpi/fortran/mpif-h/profile/Makefile.am
@@ -15,6 +15,8 @@
# Copyright (c) 2011-2013 Universite Bordeaux 1
# Copyright (c) 2013-2014 Los Alamos National Security, LLC. All rights
# reserved.
+# Copyright (c) 2015 Research Organization for Information Science
+# and Technology (RIST). All rights reserved.
# $COPYRIGHT$
#
# Additional copyrights may follow
@@ -426,7 +428,9 @@ psizeof_f.f90:
$(OMPI_V_GEN) $(sizeof_pl) \
--impl=$@ --ierror=mandatory --pmpi \
--maxrank=$(OMPI_FORTRAN_MAX_ARRAY_RANK) \
- --generate=$(OMPI_FORTRAN_BUILD_SIZEOF)
+ --generate=$(OMPI_FORTRAN_BUILD_SIZEOF) \
+ --real16=$(OMPI_HAVE_FORTRAN_REAL16) \
+ --complex32=$(OMPI_HAVE_FORTRAN_COMPLEX32)
#
# The library itself
diff --git a/ompi/mpi/fortran/use-mpi-f08/Makefile.am b/ompi/mpi/fortran/use-mpi-f08/Makefile.am
index c8b26d7..8489ac0 100644
--- a/ompi/mpi/fortran/use-mpi-f08/Makefile.am
+++ b/ompi/mpi/fortran/use-mpi-f08/Makefile.am
@@ -7,6 +7,8 @@
# Copyright (c) 2012-2013 Inria. All rights reserved.
# Copyright (c) 2013 Los Alamos National Security, LLC. All rights
# reserved.
+# Copyright (c) 2015 Research Organization for Information Science
+# and Technology (RIST). All rights reserved.
#
# $COPYRIGHT$
#
@@ -56,7 +58,9 @@ sizeof_f08.h:
$(OMPI_V_GEN) $(sizeof_pl) \
--header=$@ --ierror=optional \
--maxrank=$(OMPI_FORTRAN_MAX_ARRAY_RANK) \
- --generate=$(OMPI_FORTRAN_BUILD_SIZEOF)
+ --generate=$(OMPI_FORTRAN_BUILD_SIZEOF) \
+ --real16=$(OMPI_HAVE_FORTRAN_REAL16) \
+ --complex32=$(OMPI_HAVE_FORTRAN_COMPLEX32)
sizeof_f08.f90: $(top_builddir)/config.status
sizeof_f08.f90: $(sizeof_pl)
@@ -64,7 +68,9 @@ sizeof_f08.f90:
$(OMPI_V_GEN) $(sizeof_pl) \
--impl=$@ --ierror=optional --mpi \
--maxrank=$(OMPI_FORTRAN_MAX_ARRAY_RANK) \
- --generate=$(OMPI_FORTRAN_BUILD_SIZEOF)
+ --generate=$(OMPI_FORTRAN_BUILD_SIZEOF) \
+ --real16=$(OMPI_HAVE_FORTRAN_REAL16) \
+ --complex32=$(OMPI_HAVE_FORTRAN_COMPLEX32)
profile/psizeof_f08.f90: $(top_builddir)/config.status
profile/psizeof_f08.f90: $(sizeof_pl)
@@ -72,7 +78,9 @@ profile/psizeof_f08.f90:
$(OMPI_V_GEN) $(sizeof_pl) \
--impl=$@ --ierror=optional --pmpi \
--maxrank=$(OMPI_FORTRAN_MAX_ARRAY_RANK) \
- --generate=$(OMPI_FORTRAN_BUILD_SIZEOF)
+ --generate=$(OMPI_FORTRAN_BUILD_SIZEOF) \
+ --real16=$(OMPI_HAVE_FORTRAN_REAL16) \
+ --complex32=$(OMPI_HAVE_FORTRAN_COMPLEX32)
CLEANFILES += sizeof_f08.h sizeof_f08.f90 profile/psizeof_f08.f90
diff --git a/ompi/mpi/fortran/use-mpi-ignore-tkr/Makefile.am b/ompi/mpi/fortran/use-mpi-ignore-tkr/Makefile.am
index d404020..e60c367 100644
--- a/ompi/mpi/fortran/use-mpi-ignore-tkr/Makefile.am
+++ b/ompi/mpi/fortran/use-mpi-ignore-tkr/Makefile.am
@@ -1,6 +1,8 @@
# -*- makefile -*-
#
# Copyright (c) 2006-2014 Cisco Systems, Inc. All rights reserved.
+# Copyright (c) 2015 Research Organization for Information Science
+# and Technology (RIST). All rights reserved.
#
# $COPYRIGHT$
#
@@ -82,7 +84,9 @@ mpi-ignore-tkr-sizeof.h:
$(OMPI_V_GEN) $(sizeof_pl) \
--header=$@ --ierror=mandatory \
--maxrank=$(OMPI_FORTRAN_MAX_ARRAY_RANK) \
- --generate=$(OMPI_FORTRAN_BUILD_SIZEOF)
+ --generate=$(OMPI_FORTRAN_BUILD_SIZEOF) \
+ --real16=$(OMPI_HAVE_FORTRAN_REAL16) \
+ --complex32=$(OMPI_HAVE_FORTRAN_COMPLEX32)
mpi-ignore-tkr-sizeof.f90: $(top_builddir)/config.status
mpi-ignore-tkr-sizeof.f90: $(sizeof_pl)
@@ -90,7 +94,9 @@ mpi-ignore-tkr-sizeof.f90:
$(OMPI_V_GEN) $(sizeof_pl) \
--impl=$@ --ierror=mandatory --mpi --pmpi \
--maxrank=$(OMPI_FORTRAN_MAX_ARRAY_RANK) \
- --generate=$(OMPI_FORTRAN_BUILD_SIZEOF)
+ --generate=$(OMPI_FORTRAN_BUILD_SIZEOF) \
+ --real16=$(OMPI_HAVE_FORTRAN_REAL16) \
+ --complex32=$(OMPI_HAVE_FORTRAN_COMPLEX32)
#
# Clean up generated and module files
diff --git a/ompi/mpi/fortran/use-mpi-tkr/Makefile.am b/ompi/mpi/fortran/use-mpi-tkr/Makefile.am
index 549ac1d..c8def2f 100644
--- a/ompi/mpi/fortran/use-mpi-tkr/Makefile.am
+++ b/ompi/mpi/fortran/use-mpi-tkr/Makefile.am
@@ -13,7 +13,7 @@
# Copyright (c) 2006-2014 Cisco Systems, Inc. All rights reserved.
# Copyright (c) 2007 Los Alamos National Security, LLC. All rights
# reserved.
-# Copyright (c) 2014 Research Organization for Information Science
+# Copyright (c) 2014-2015 Research Organization for Information Science
# and Technology (RIST). All rights reserved.
# $COPYRIGHT$
#
@@ -104,7 +104,9 @@ mpi-tkr-sizeof.h:
$(OMPI_V_GEN) $(sizeof_pl) \
--header=$@ --ierror=mandatory \
--maxrank=$(OMPI_FORTRAN_MAX_ARRAY_RANK) \
- --generate=$(OMPI_FORTRAN_BUILD_SIZEOF)
+ --generate=$(OMPI_FORTRAN_BUILD_SIZEOF) \
+ --real16=$(OMPI_HAVE_FORTRAN_REAL16) \
+ --complex32=$(OMPI_HAVE_FORTRAN_COMPLEX32)
mpi-tkr-sizeof.f90: $(top_builddir)/config.status
mpi-tkr-sizeof.f90: $(sizeof_pl)
@@ -112,7 +114,9 @@ mpi-tkr-sizeof.f90:
$(OMPI_V_GEN) $(sizeof_pl) \
--impl=$@ --ierror=mandatory --mpi --pmpi \
--maxrank=$(OMPI_FORTRAN_MAX_ARRAY_RANK) \
- --generate=$(OMPI_FORTRAN_BUILD_SIZEOF)
+ --generate=$(OMPI_FORTRAN_BUILD_SIZEOF) \
+ --real16=$(OMPI_HAVE_FORTRAN_REAL16) \
+ --complex32=$(OMPI_HAVE_FORTRAN_COMPLEX32)
#
# Clean up all F90 module files and all generated files
--
2.3.7

15
extra/openmpi/PKGBUILD
View file

@ -4,11 +4,11 @@
# ALARM: Kevin Mihelich <kevin@archlinuxarm.org
# - only use valgrind with v7
# - disable fortran bindings for now, FTBFS on ARM
# - patch to fix fortran bindings on ARM (should be included in 1.8.5)
pkgname=openmpi
pkgver=1.8.4
pkgrel=1
pkgrel=1.1
pkgdesc='High performance message passing library (MPI)'
arch=(i686 x86_64)
url='http://www.open-mpi.org'
@ -18,9 +18,11 @@ makedepends=(inetutils gcc-fortran)
optdepends=('gcc-fortran: fortran support')
options=(staticlibs)
source=(http://www.open-mpi.org/software/ompi/v1.8/downloads/${pkgname}-${pkgver}.tar.bz2
system_ltdl.patch)
system_ltdl.patch
0001-Fortran-only-emit-real16-and-complex32-if-supported.patch)
sha1sums=('88ae39850fcf0db05ac20e35dd9e4cacc75bde4d'
'd5f8a3d463f1a1f29ca4725d6fb3b9f8c40799dc')
'd5f8a3d463f1a1f29ca4725d6fb3b9f8c40799dc'
'4d9db4aa339814a6bb00cf6f32d0e5155ca701a0')
[[ $CARCH = armv7h ]] && makedepends+=('valgrind')
@ -30,6 +32,9 @@ prepare() {
# Make sure we use the system ltdl library rather than the ones in the tarball
rm -r opal/libltdl
patch -p1 < ../system_ltdl.patch
# Fix for fortran on ARM
patch -p1 -i ../0001-Fortran-only-emit-real16-and-complex32-if-supported.patch
./autogen.pl
}
@ -41,7 +46,7 @@ build() {
./configure --prefix=/usr \
--sysconfdir=/etc/${pkgname} \
--enable-mpi-fortran=none \
--enable-mpi-fortran=all \
--libdir=/usr/lib/${pkgname} \
--with-threads=posix \
--enable-smp-locks \