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extra/openmpi to 1.8.5-2

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This commit is contained in:
Kevin Mihelich 2015-05-22 01:17:39 +00:00
parent 7960f30335
commit 514143875b
3 changed files with 4 additions and 342 deletions
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268
extra/openmpi/0001-Fortran-only-emit-real16-and-complex32-if-supported.patch
View file

@ -1,268 +0,0 @@
From 29a0d71a482d4a96d6ccc49bad575ae6da8bf893 Mon Sep 17 00:00:00 2001
From: Jeff Squyres <jsquyres@cisco.com>
Date: Tue, 6 Jan 2015 09:49:47 -0800
Subject: [PATCH] Fortran: only emit real16 and complex32 if supported
Fixes open-mpi/ompi-release#148. Thanks to @opoplawski for
identifying the issue.
---
ompi/include/Makefile.am | 6 ++++--
ompi/mpi/fortran/base/gen-mpi-sizeof.pl | 18 +++++++++++++++---
ompi/mpi/fortran/mpif-h/Makefile.am | 6 +++++-
ompi/mpi/fortran/mpif-h/profile/Makefile.am | 6 +++++-
ompi/mpi/fortran/use-mpi-f08/Makefile.am | 14 +++++++++++---
ompi/mpi/fortran/use-mpi-ignore-tkr/Makefile.am | 10 ++++++++--
ompi/mpi/fortran/use-mpi-tkr/Makefile.am | 10 +++++++---
7 files changed, 55 insertions(+), 15 deletions(-)
diff --git a/ompi/include/Makefile.am b/ompi/include/Makefile.am
index c38eb47..4db50fb 100644
--- a/ompi/include/Makefile.am
+++ b/ompi/include/Makefile.am
@@ -11,7 +11,7 @@
# All rights reserved.
# Copyright (c) 2006-2014 Cisco Systems, Inc. All rights reserved.
# Copyright (c) 2009-2011 Oak Ridge National Labs. All rights reserved.
-# Copyright (c) 2014 Research Organization for Information Science
+# Copyright (c) 2014-2015 Research Organization for Information Science
# and Technology (RIST). All rights reserved.
# $COPYRIGHT$
#
@@ -82,7 +82,9 @@ mpif-sizeof.h:
$(OMPI_V_GEN) $(sizeof_pl) \
--header=$@ --ierror=mandatory \
--maxrank=$(OMPI_FORTRAN_MAX_ARRAY_RANK) \
- --generate=$(OMPI_FORTRAN_BUILD_SIZEOF)
+ --generate=$(OMPI_FORTRAN_BUILD_SIZEOF) \
+ --real16=$(OMPI_HAVE_FORTRAN_REAL16) \
+ --complex32=$(OMPI_HAVE_FORTRAN_COMPLEX32)
if WANT_INSTALL_HEADERS
ompidir = $(ompiincludedir)
diff --git a/ompi/mpi/fortran/base/gen-mpi-sizeof.pl b/ompi/mpi/fortran/base/gen-mpi-sizeof.pl
index 797c42b..a422c9a 100755
--- a/ompi/mpi/fortran/base/gen-mpi-sizeof.pl
+++ b/ompi/mpi/fortran/base/gen-mpi-sizeof.pl
@@ -1,6 +1,8 @@
#!/usr/bin/env perl
#
# Copyright (c) 2014 Cisco Systems, Inc. All rights reserved.
+# Copyright (c) 2015 Research Organization for Information Science
+# and Technology (RIST). All rights reserved.
# $COPYRIGHT$
#
# Script to generate the overloaded MPI_SIZEOF interfaces and
@@ -30,17 +32,21 @@ my $ierror_arg;
my $maxrank_arg;
my $generate_arg;
my $mpi_arg;
+my $mpi_real16;
+my $mpi_complex32;
my $pmpi_arg;
my $help_arg = 0;
&Getopt::Long::Configure("bundling");
-my $ok = Getopt::Long::GetOptions("header=s" => \$header_arg,
+my $ok = Getopt::Long::GetOptions("complex32=i" => \$mpi_complex32,
+ "header=s" => \$header_arg,
"impl=s" => \$impl_arg,
"ierror=s" => \$ierror_arg,
"maxrank=s" => \$maxrank_arg,
"generate=i" => \$generate_arg,
"mpi" => \$mpi_arg,
"pmpi" => \$pmpi_arg,
+ "real16=i" => \$mpi_real16,
"help|h" => \$help_arg);
die "Must specify header and/or impl filenames to output"
@@ -54,6 +60,8 @@ die "max array rank must be >= 4 and <=15"
die "Must specify --pmpi and/or --mpi if --impl is specified"
if (defined($generate_arg) && $generate_arg &&
(defined($impl_arg) && !defined($mpi_arg) && !defined($pmpi_arg)));
+die "Must specify real16 and complex32"
+ if (!defined($mpi_real16) || !defined($mpi_complex32));
#############################################################################
@@ -141,8 +149,12 @@ for my $size (qw/8 16 32 64/) {
queue_sub("integer(int${size})", "int${size}", "int${size}");
}
for my $size (qw/32 64 128/) {
- queue_sub("real(real${size})", "real${size}", "real${size}");
- queue_sub("complex(real${size})", "complex${size}", "real${size}");
+ if ($size != 128 || $mpi_real16 == 1) {
+ queue_sub("real(real${size})", "real${size}", "real${size}");
+ }
+ if ($size != 128 || $mpi_complex32 == 1) {
+ queue_sub("complex(real${size})", "complex${size}", "real${size}");
+ }
}
#######################################################
diff --git a/ompi/mpi/fortran/mpif-h/Makefile.am b/ompi/mpi/fortran/mpif-h/Makefile.am
index b586f47..8d5330c 100644
--- a/ompi/mpi/fortran/mpif-h/Makefile.am
+++ b/ompi/mpi/fortran/mpif-h/Makefile.am
@@ -14,6 +14,8 @@
# Copyright (c) 2011-2013 Universite Bordeaux 1
# Copyright (c) 2013-2014 Los Alamos National Security, LLC. All rights
# reserved.
+# Copyright (c) 2015 Research Organization for Information Science
+# and Technology (RIST). All rights reserved.
# $COPYRIGHT$
#
# Additional copyrights may follow
@@ -135,7 +137,9 @@ sizeof_f.f90:
$(OMPI_V_GEN) $(sizeof_pl) \
--impl=$@ --ierror=mandatory --mpi \
--maxrank=$(OMPI_FORTRAN_MAX_ARRAY_RANK) \
- --generate=$(OMPI_FORTRAN_BUILD_SIZEOF)
+ --generate=$(OMPI_FORTRAN_BUILD_SIZEOF) \
+ --real16=$(OMPI_HAVE_FORTRAN_REAL16) \
+ --complex32=$(OMPI_HAVE_FORTRAN_COMPLEX32)
endif OMPI_BUILD_FORTRAN_MPIFH_BINDINGS
if BUILD_MPI_FORTRAN_MPIFH_BINDINGS_LAYER
diff --git a/ompi/mpi/fortran/mpif-h/profile/Makefile.am b/ompi/mpi/fortran/mpif-h/profile/Makefile.am
index 2abe58a..0d32e93 100644
--- a/ompi/mpi/fortran/mpif-h/profile/Makefile.am
+++ b/ompi/mpi/fortran/mpif-h/profile/Makefile.am
@@ -15,6 +15,8 @@
# Copyright (c) 2011-2013 Universite Bordeaux 1
# Copyright (c) 2013-2014 Los Alamos National Security, LLC. All rights
# reserved.
+# Copyright (c) 2015 Research Organization for Information Science
+# and Technology (RIST). All rights reserved.
# $COPYRIGHT$
#
# Additional copyrights may follow
@@ -426,7 +428,9 @@ psizeof_f.f90:
$(OMPI_V_GEN) $(sizeof_pl) \
--impl=$@ --ierror=mandatory --pmpi \
--maxrank=$(OMPI_FORTRAN_MAX_ARRAY_RANK) \
- --generate=$(OMPI_FORTRAN_BUILD_SIZEOF)
+ --generate=$(OMPI_FORTRAN_BUILD_SIZEOF) \
+ --real16=$(OMPI_HAVE_FORTRAN_REAL16) \
+ --complex32=$(OMPI_HAVE_FORTRAN_COMPLEX32)
#
# The library itself
diff --git a/ompi/mpi/fortran/use-mpi-f08/Makefile.am b/ompi/mpi/fortran/use-mpi-f08/Makefile.am
index c8b26d7..8489ac0 100644
--- a/ompi/mpi/fortran/use-mpi-f08/Makefile.am
+++ b/ompi/mpi/fortran/use-mpi-f08/Makefile.am
@@ -7,6 +7,8 @@
# Copyright (c) 2012-2013 Inria. All rights reserved.
# Copyright (c) 2013 Los Alamos National Security, LLC. All rights
# reserved.
+# Copyright (c) 2015 Research Organization for Information Science
+# and Technology (RIST). All rights reserved.
#
# $COPYRIGHT$
#
@@ -56,7 +58,9 @@ sizeof_f08.h:
$(OMPI_V_GEN) $(sizeof_pl) \
--header=$@ --ierror=optional \
--maxrank=$(OMPI_FORTRAN_MAX_ARRAY_RANK) \
- --generate=$(OMPI_FORTRAN_BUILD_SIZEOF)
+ --generate=$(OMPI_FORTRAN_BUILD_SIZEOF) \
+ --real16=$(OMPI_HAVE_FORTRAN_REAL16) \
+ --complex32=$(OMPI_HAVE_FORTRAN_COMPLEX32)
sizeof_f08.f90: $(top_builddir)/config.status
sizeof_f08.f90: $(sizeof_pl)
@@ -64,7 +68,9 @@ sizeof_f08.f90:
$(OMPI_V_GEN) $(sizeof_pl) \
--impl=$@ --ierror=optional --mpi \
--maxrank=$(OMPI_FORTRAN_MAX_ARRAY_RANK) \
- --generate=$(OMPI_FORTRAN_BUILD_SIZEOF)
+ --generate=$(OMPI_FORTRAN_BUILD_SIZEOF) \
+ --real16=$(OMPI_HAVE_FORTRAN_REAL16) \
+ --complex32=$(OMPI_HAVE_FORTRAN_COMPLEX32)
profile/psizeof_f08.f90: $(top_builddir)/config.status
profile/psizeof_f08.f90: $(sizeof_pl)
@@ -72,7 +78,9 @@ profile/psizeof_f08.f90:
$(OMPI_V_GEN) $(sizeof_pl) \
--impl=$@ --ierror=optional --pmpi \
--maxrank=$(OMPI_FORTRAN_MAX_ARRAY_RANK) \
- --generate=$(OMPI_FORTRAN_BUILD_SIZEOF)
+ --generate=$(OMPI_FORTRAN_BUILD_SIZEOF) \
+ --real16=$(OMPI_HAVE_FORTRAN_REAL16) \
+ --complex32=$(OMPI_HAVE_FORTRAN_COMPLEX32)
CLEANFILES += sizeof_f08.h sizeof_f08.f90 profile/psizeof_f08.f90
diff --git a/ompi/mpi/fortran/use-mpi-ignore-tkr/Makefile.am b/ompi/mpi/fortran/use-mpi-ignore-tkr/Makefile.am
index d404020..e60c367 100644
--- a/ompi/mpi/fortran/use-mpi-ignore-tkr/Makefile.am
+++ b/ompi/mpi/fortran/use-mpi-ignore-tkr/Makefile.am
@@ -1,6 +1,8 @@
# -*- makefile -*-
#
# Copyright (c) 2006-2014 Cisco Systems, Inc. All rights reserved.
+# Copyright (c) 2015 Research Organization for Information Science
+# and Technology (RIST). All rights reserved.
#
# $COPYRIGHT$
#
@@ -82,7 +84,9 @@ mpi-ignore-tkr-sizeof.h:
$(OMPI_V_GEN) $(sizeof_pl) \
--header=$@ --ierror=mandatory \
--maxrank=$(OMPI_FORTRAN_MAX_ARRAY_RANK) \
- --generate=$(OMPI_FORTRAN_BUILD_SIZEOF)
+ --generate=$(OMPI_FORTRAN_BUILD_SIZEOF) \
+ --real16=$(OMPI_HAVE_FORTRAN_REAL16) \
+ --complex32=$(OMPI_HAVE_FORTRAN_COMPLEX32)
mpi-ignore-tkr-sizeof.f90: $(top_builddir)/config.status
mpi-ignore-tkr-sizeof.f90: $(sizeof_pl)
@@ -90,7 +94,9 @@ mpi-ignore-tkr-sizeof.f90:
$(OMPI_V_GEN) $(sizeof_pl) \
--impl=$@ --ierror=mandatory --mpi --pmpi \
--maxrank=$(OMPI_FORTRAN_MAX_ARRAY_RANK) \
- --generate=$(OMPI_FORTRAN_BUILD_SIZEOF)
+ --generate=$(OMPI_FORTRAN_BUILD_SIZEOF) \
+ --real16=$(OMPI_HAVE_FORTRAN_REAL16) \
+ --complex32=$(OMPI_HAVE_FORTRAN_COMPLEX32)
#
# Clean up generated and module files
diff --git a/ompi/mpi/fortran/use-mpi-tkr/Makefile.am b/ompi/mpi/fortran/use-mpi-tkr/Makefile.am
index 549ac1d..c8def2f 100644
--- a/ompi/mpi/fortran/use-mpi-tkr/Makefile.am
+++ b/ompi/mpi/fortran/use-mpi-tkr/Makefile.am
@@ -13,7 +13,7 @@
# Copyright (c) 2006-2014 Cisco Systems, Inc. All rights reserved.
# Copyright (c) 2007 Los Alamos National Security, LLC. All rights
# reserved.
-# Copyright (c) 2014 Research Organization for Information Science
+# Copyright (c) 2014-2015 Research Organization for Information Science
# and Technology (RIST). All rights reserved.
# $COPYRIGHT$
#
@@ -104,7 +104,9 @@ mpi-tkr-sizeof.h:
$(OMPI_V_GEN) $(sizeof_pl) \
--header=$@ --ierror=mandatory \
--maxrank=$(OMPI_FORTRAN_MAX_ARRAY_RANK) \
- --generate=$(OMPI_FORTRAN_BUILD_SIZEOF)
+ --generate=$(OMPI_FORTRAN_BUILD_SIZEOF) \
+ --real16=$(OMPI_HAVE_FORTRAN_REAL16) \
+ --complex32=$(OMPI_HAVE_FORTRAN_COMPLEX32)
mpi-tkr-sizeof.f90: $(top_builddir)/config.status
mpi-tkr-sizeof.f90: $(sizeof_pl)
@@ -112,7 +114,9 @@ mpi-tkr-sizeof.f90:
$(OMPI_V_GEN) $(sizeof_pl) \
--impl=$@ --ierror=mandatory --mpi --pmpi \
--maxrank=$(OMPI_FORTRAN_MAX_ARRAY_RANK) \
- --generate=$(OMPI_FORTRAN_BUILD_SIZEOF)
+ --generate=$(OMPI_FORTRAN_BUILD_SIZEOF) \
+ --real16=$(OMPI_HAVE_FORTRAN_REAL16) \
+ --complex32=$(OMPI_HAVE_FORTRAN_COMPLEX32)
#
# Clean up all F90 module files and all generated files
--
2.3.7

12
extra/openmpi/PKGBUILD
View file

@ -4,12 +4,11 @@
# ALARM: Kevin Mihelich <kevin@archlinuxarm.org
# - only use valgrind with v7
# - patch to fix fortran bindings on ARM (should be included in 1.8.5)
noautobuild=1
pkgname=openmpi
pkgver=1.8.4
pkgver=1.8.5
pkgrel=2
pkgdesc='High performance message passing library (MPI)'
arch=(i686 x86_64)
@ -19,12 +18,8 @@ depends=(libltdl hwloc)
makedepends=(inetutils gcc-fortran)
optdepends=('gcc-fortran: fortran support')
options=(staticlibs)
source=(http://www.open-mpi.org/software/ompi/v1.8/downloads/${pkgname}-${pkgver}.tar.bz2
system_ltdl.patch
0001-Fortran-only-emit-real16-and-complex32-if-supported.patch)
sha1sums=('88ae39850fcf0db05ac20e35dd9e4cacc75bde4d'
'd5f8a3d463f1a1f29ca4725d6fb3b9f8c40799dc'
'4d9db4aa339814a6bb00cf6f32d0e5155ca701a0')
source=(http://www.open-mpi.org/software/ompi/v1.8/downloads/${pkgname}-${pkgver}.tar.bz2)
sha1sums=('2e0408dbb033b0df21d1f95fffb872f2a8237de6')
[[ $CARCH = armv7h ]] && makedepends+=('valgrind')
@ -46,6 +41,7 @@ build() {
# enable valgrind and memchecker for v7
[[ $CARCH = armv7h ]] && CONFIG='--with-valgrind --enable-memchecker'
./autogen.pl
./configure --prefix=/usr \
--sysconfdir=/etc/${pkgname} \
--enable-mpi-fortran=all \

66
extra/openmpi/system_ltdl.patch
View file

@ -1,66 +0,0 @@
diff --git a/config/ltdl.m4 b/config/ltdl.m4
index ea76f4d..2f1cbfe 100644
--- a/config/ltdl.m4
+++ b/config/ltdl.m4
@@ -162,6 +162,8 @@ m4_defun([_LTDL_INSTALLABLE],
fi
fi
+enable_ltdl_install=no
+
# If configure.ac declared an installable ltdl, and the user didn't override
# with --disable-ltdl-install, we will install the shipped libltdl.
case $enable_ltdl_install in
diff --git a/ompi/debuggers/Makefile.am b/ompi/debuggers/Makefile.am
index 2adf3fd..5b22a91 100644
--- a/ompi/debuggers/Makefile.am
+++ b/ompi/debuggers/Makefile.am
@@ -46,8 +46,7 @@ headers = \
# Simple checks to ensure that the DSOs are functional
dlopen_test_SOURCES = dlopen_test.c
-dlopen_test_CPPFLAGS = -I$(top_srcdir)/opal/libltdl
-dlopen_test_LDADD = $(top_builddir)/opal/libltdl/libltdlc.la
+dlopen_test_LDADD = -lltdl
predefined_gap_test_SOURCES = predefined_gap_test.c
predefined_gap_test_LDFLAGS = $(WRAPPER_EXTRA_LDFLAGS)
diff --git a/ompi/debuggers/dlopen_test.c b/ompi/debuggers/dlopen_test.c
index 029a4ee..023afb8 100644
--- a/ompi/debuggers/dlopen_test.c
+++ b/ompi/debuggers/dlopen_test.c
@@ -13,7 +13,7 @@
#include <string.h>
#include <stdlib.h>
-#include "opal/libltdl/ltdl.h"
+#include "ltdl.h"
static int do_test(void);
diff --git a/test/support/components.c b/test/support/components.c
index 41c4345..6b4b464 100644
--- a/test/support/components.c
+++ b/test/support/components.c
@@ -24,7 +24,7 @@
#include "opal/constants.h"
#include "opal/mca/mca.h"
-#include "opal/libltdl/ltdl.h"
+#include "ltdl.h"
#include "components.h"
diff --git a/test/support/components.h b/test/support/components.h
index 6db1f0d..fc8dfc5 100644
--- a/test/support/components.h
+++ b/test/support/components.h
@@ -20,7 +20,7 @@
#ifndef OMPI_SUPPORT_COMPONENTS_H
#define OMPI_SUPPORT_COMPONENTS_H
-#include "opal/libltdl/ltdl.h"
+#include "ltdl.h"
#include "opal/mca/mca.h"
BEGIN_C_DECLS