From 3ec18abac4cff6bba1c3d6b67a4dc035ad5f9a1b Mon Sep 17 00:00:00 2001 From: Alex Morehead Date: Sun, 10 Mar 2024 14:58:56 -0500 Subject: [PATCH] Update environment.yaml --- environment.yaml | 93 +++++++++++++++++++++++++++++++++++++++++++----- 1 file changed, 84 insertions(+), 9 deletions(-) diff --git a/environment.yaml b/environment.yaml index e5ba62e..8882e34 100644 --- a/environment.yaml +++ b/environment.yaml @@ -1,9 +1,11 @@ name: RFAA channels: + - predector - pyg - bioconda - pytorch - nvidia + - biocore - conda-forge dependencies: - _libgcc_mutex=0.1=conda_forge @@ -11,13 +13,18 @@ dependencies: - absl-py=2.1.0=pyhd8ed1ab_0 - aiohttp=3.9.3=py310h2372a71_0 - aiosignal=1.3.1=pyhd8ed1ab_0 + - alsa-lib=1.2.8=h166bdaf_0 - asttokens=2.4.1=pyhd8ed1ab_0 - astunparse=1.6.3=pyhd8ed1ab_0 - async-timeout=4.0.3=pyhd8ed1ab_0 + - attr=2.5.1=h166bdaf_1 - attrs=23.2.0=pyh71513ae_0 - blas=2.121=mkl - blas-devel=3.9.0=21_linux64_mkl + - blast-legacy=2.2.26=2 - blinker=1.7.0=pyhd8ed1ab_0 + - brotli=1.1.0=hd590300_1 + - brotli-bin=1.1.0=hd590300_1 - brotli-python=1.1.0=py310hc6cd4ac_1 - bzip2=1.0.8=hd590300_5 - c-ares=1.27.0=hd590300_0 @@ -31,7 +38,8 @@ dependencies: - charset-normalizer=3.3.2=pyhd8ed1ab_0 - click=8.1.7=unix_pyh707e725_0 - colorama=0.4.6=pyhd8ed1ab_0 - - cryptography=42.0.5=py310h75e40e8_0 + - contourpy=1.2.0=py310hd41b1e2_0 + - cryptography=42.0.2=py310hb8475ec_0 - cuda-cudart=11.8.89=0 - cuda-cupti=11.8.87=0 - cuda-libraries=11.8.0=0 @@ -41,11 +49,14 @@ dependencies: - cuda-version=11.8=h70ddcb2_3 - cudatoolkit=11.8.0=h4ba93d1_13 - cudnn=8.8.0.121=hcdd5f01_4 + - cycler=0.12.1=pyhd8ed1ab_0 + - dbus=1.13.6=h5008d03_3 - deepdiff=6.7.1=pyhd8ed1ab_0 - dgl=1.1.2=cuda112py310hc641c19_2 - executing=2.0.1=pyhd8ed1ab_0 - expat=2.6.1=h59595ed_0 - ffmpeg=4.3=hf484d3e_0 + - fftw=3.3.10=nompi_hc118613_108 - filelock=3.13.1=pyhd8ed1ab_0 - flatbuffers=22.12.06=hcb278e6_2 - font-ttf-dejavu-sans-mono=2.37=hab24e00_0 @@ -55,33 +66,44 @@ dependencies: - fontconfig=2.14.2=h14ed4e7_0 - fonts-conda-ecosystem=1=0 - fonts-conda-forge=1=0 + - fonttools=4.49.0=py310h2372a71_0 - freetype=2.12.1=h267a509_2 - frozenlist=1.4.1=py310h2372a71_0 - fsspec=2024.2.0=pyhca7485f_0 - gast=0.4.0=pyh9f0ad1d_0 - gettext=0.21.1=h27087fc_0 - giflib=5.2.1=h0b41bf4_3 + - glib=2.78.4=hfc55251_4 + - glib-tools=2.78.4=hfc55251_4 - gmp=6.3.0=h59595ed_0 - gmpy2=2.1.2=py310h3ec546c_1 - gnutls=3.6.13=h85f3911_1 - google-auth=2.28.2=pyhca7485f_0 - google-auth-oauthlib=0.4.6=pyhd8ed1ab_0 - google-pasta=0.2.0=pyh8c360ce_0 + - graphite2=1.3.13=h58526e2_1001 - grpcio=1.51.1=py310h4a5735c_1 - - h5py=3.10.0=nompi_py310h65828d5_101 - - hdf5=1.14.3=nompi_h4f84152_100 + - gst-plugins-base=1.22.0=h4243ec0_2 + - gstreamer=1.22.0=h25f0c4b_2 + - gstreamer-orc=0.4.38=hd590300_0 + - gzip=1.13=hd590300_0 + - h5py=3.9.0=nompi_py310hcca72df_101 + - harfbuzz=6.0.0=h8e241bc_0 + - hdf5=1.14.1=nompi_h4f84152_100 - hhsuite=3.3.0=py310pl5321h068649b_10 - icecream=2.1.3=pyhd8ed1ab_0 - icu=70.1=h27087fc_0 - idna=3.6=pyhd8ed1ab_0 - importlib-metadata=7.0.2=pyha770c72_0 + - jack=1.9.22=h11f4161_0 - jinja2=3.1.3=pyhd8ed1ab_0 - joblib=1.3.2=pyhd8ed1ab_0 - jpeg=9e=h0b41bf4_3 - keras=2.11.0=pyhd8ed1ab_0 - keras-preprocessing=1.1.2=pyhd8ed1ab_0 - keyutils=1.6.1=h166bdaf_0 - - krb5=1.21.2=h659d440_0 + - kiwisolver=1.4.5=py310hd41b1e2_1 + - krb5=1.20.1=h81ceb04_0 - lame=3.100=h166bdaf_1003 - lcms2=2.15=hfd0df8a_0 - ld_impl_linux-64=2.40=h41732ed_0 @@ -89,67 +111,98 @@ dependencies: - libabseil=20220623.0=cxx17_h05df665_6 - libaec=1.1.2=h59595ed_1 - libblas=3.9.0=21_linux64_mkl + - libbrotlicommon=1.1.0=hd590300_1 + - libbrotlidec=1.1.0=hd590300_1 + - libbrotlienc=1.1.0=hd590300_1 + - libcap=2.67=he9d0100_0 - libcblas=3.9.0=21_linux64_mkl + - libclang=15.0.7=default_hb11cfb5_4 + - libclang13=15.0.7=default_ha2b6cf4_4 - libcublas=11.11.3.6=0 - libcufft=10.9.0.58=0 - libcufile=1.9.0.20=0 + - libcups=2.3.3=h36d4200_3 - libcurand=10.3.5.119=0 - - libcurl=8.5.0=hca28451_0 + - libcurl=8.1.2=h409715c_0 - libcusolver=11.4.1.48=0 - libcusparse=11.7.5.86=0 + - libdb=6.2.32=h9c3ff4c_0 - libdeflate=1.17=h0b41bf4_0 - libedit=3.1.20191231=he28a2e2_2 - libev=4.33=hd590300_2 + - libevent=2.1.10=h28343ad_4 - libexpat=2.6.1=h59595ed_0 - libffi=3.4.2=h7f98852_5 + - libflac=1.4.3=h59595ed_0 - libgcc-ng=13.2.0=h807b86a_5 + - libgcrypt=1.10.3=hd590300_0 - libgfortran-ng=13.2.0=h69a702a_5 - libgfortran5=13.2.0=ha4646dd_5 - libglib=2.78.4=hf2295e7_4 - libgomp=13.2.0=h807b86a_5 + - libgpg-error=1.48=h71f35ed_0 - libgrpc=1.51.1=h4fad500_1 - libhwloc=2.9.1=hd6dc26d_0 - libiconv=1.17=hd590300_2 - liblapack=3.9.0=21_linux64_mkl - liblapacke=3.9.0=21_linux64_mkl - - libnghttp2=1.58.0=h47da74e_1 + - libllvm15=15.0.7=hadd5161_1 + - libnghttp2=1.58.0=h47da74e_0 - libnpp=11.8.0.86=0 - libnsl=2.0.1=hd590300_0 - libnvjpeg=11.9.0.86=0 + - libogg=1.3.4=h7f98852_1 + - libopus=1.3.1=h7f98852_1 - libpng=1.6.43=h2797004_0 + - libpq=15.3=hbcd7760_1 - libprotobuf=3.21.12=hfc55251_2 + - libsndfile=1.2.2=hc60ed4a_1 - libsqlite=3.45.1=h2797004_0 - libssh2=1.11.0=h0841786_0 - libstdcxx-ng=13.2.0=h7e041cc_5 + - libsystemd0=253=h8c4010b_1 - libtiff=4.5.0=h6adf6a1_2 + - libtool=2.4.7=h27087fc_0 + - libudev1=253=h0b41bf4_1 - libuuid=2.38.1=h0b41bf4_0 - libuv=1.48.0=hd590300_0 + - libvorbis=1.3.7=h9c3ff4c_0 - libwebp-base=1.3.2=hd590300_0 - libxcb=1.13=h7f98852_1004 - libxcrypt=4.4.36=hd590300_1 + - libxkbcommon=1.5.0=h79f4944_1 - libxml2=2.10.3=hca2bb57_4 - libzlib=1.2.13=hd590300_5 - llvm-openmp=17.0.6=h4dfa4b3_0 + - lz4-c=1.9.4=hcb278e6_0 - markdown=3.5.2=pyhd8ed1ab_0 - markupsafe=2.1.5=py310h2372a71_0 + - matplotlib=3.8.3=py310hff52083_0 + - matplotlib-base=3.8.3=py310h62c0568_0 - metis=5.1.1=h59595ed_2 - mkl=2024.0.0=ha957f24_49657 - mkl-devel=2024.0.0=ha770c72_49657 - mkl-include=2024.0.0=ha957f24_49657 - mpc=1.3.1=hfe3b2da_0 - mpfr=4.2.1=h9458935_0 + - mpg123=1.32.4=h59595ed_0 - mpmath=1.3.0=pyhd8ed1ab_0 - multidict=6.0.5=py310h2372a71_0 + - munkres=1.1.4=pyh9f0ad1d_0 + - mysql-common=8.0.33=hf1915f5_6 + - mysql-libs=8.0.33=hca2cd23_6 - nccl=2.20.5.1=h6103f9b_0 - ncurses=6.4=h59595ed_2 - nettle=3.6=he412f7d_0 - networkx=3.2.1=pyhd8ed1ab_0 + - nspr=4.35=h27087fc_0 + - nss=3.98=h1d7d5a4_0 - numpy=1.26.4=py310hb13e2d6_0 - oauthlib=3.2.2=pyhd8ed1ab_0 - openbabel=3.1.1=py310heaf86c6_5 - openh264=2.1.1=h780b84a_0 - openjpeg=2.5.0=hfec8fc6_2 - - openssl=3.2.1=hd590300_0 + - openssl=3.1.5=hd590300_0 - opt_einsum=3.3.0=pyhc1e730c_2 - ordered-set=4.1.0=pyhd8ed1ab_0 - orjson=3.9.15=py310hcb5633a_0 @@ -160,9 +213,14 @@ dependencies: - pillow=9.4.0=py310h023d228_1 - pip=24.0=pyhd8ed1ab_0 - pixman=0.43.2=h59595ed_0 + - ply=3.11=py_1 - protobuf=4.21.12=py310heca2aa9_0 + - psipred=4.01=1 - psutil=5.9.8=py310h2372a71_0 - pthread-stubs=0.4=h36c2ea0_1001 + - pulseaudio=16.1=hcb278e6_3 + - pulseaudio-client=16.1=h5195f5e_3 + - pulseaudio-daemon=16.1=ha8d29e2_3 - pyasn1=0.5.1=pyhd8ed1ab_0 - pyasn1-modules=0.3.0=pyhd8ed1ab_0 - pycparser=2.21=pyhd8ed1ab_0 @@ -171,8 +229,10 @@ dependencies: - pyjwt=2.8.0=pyhd8ed1ab_1 - pyopenssl=24.0.0=pyhd8ed1ab_0 - pyparsing=3.1.2=pyhd8ed1ab_0 + - pyqt=5.15.9=py310h04931ad_5 + - pyqt5-sip=12.12.2=py310hc6cd4ac_5 - pysocks=1.7.1=pyha2e5f31_6 - - python=3.10.13=hd12c33a_1_cpython + - python=3.10.13=hd12c33a_0_cpython - python-dateutil=2.9.0=pyhd8ed1ab_0 - python-flatbuffers=24.3.6=pyh59ac667_0 - python-tzdata=2024.1=pyhd8ed1ab_0 @@ -182,6 +242,7 @@ dependencies: - pytorch-mutex=1.0=cuda - pytz=2024.1=pyhd8ed1ab_0 - pyu2f=0.1.5=pyhd8ed1ab_0 + - qt-main=5.15.8=h5d23da1_6 - re2=2023.02.01=hcb278e6_0 - readline=8.2=h8228510_1 - requests=2.31.0=pyhd8ed1ab_0 @@ -190,6 +251,8 @@ dependencies: - scikit-learn=1.4.1.post1=py310h1fdf081_0 - scipy=1.12.0=py310hb13e2d6_2 - setuptools=69.1.1=pyhd8ed1ab_0 + - signalp6=6.0g=1 + - sip=6.7.12=py310hc6cd4ac_0 - six=1.16.0=pyh6c4a22f_0 - snappy=1.1.10=h9fff704_0 - sympy=1.12=pypyh9d50eac_103 @@ -203,17 +266,28 @@ dependencies: - termcolor=2.4.0=pyhd8ed1ab_0 - threadpoolctl=3.3.0=pyhc1e730c_0 - tk=8.6.13=noxft_h4845f30_101 + - toml=0.10.2=pyhd8ed1ab_0 + - tomli=2.0.1=pyhd8ed1ab_0 - torchaudio=2.0.2=py310_cu118 - torchtriton=2.0.0=py310 - torchvision=0.15.2=py310_cu118 + - tornado=6.4=py310h2372a71_0 - tqdm=4.66.2=pyhd8ed1ab_0 - typing-extensions=4.10.0=hd8ed1ab_0 - typing_extensions=4.10.0=pyha770c72_0 - tzdata=2024a=h0c530f3_0 + - unicodedata2=15.1.0=py310h2372a71_0 + - unzip=6.0=h7f98852_3 - urllib3=2.2.1=pyhd8ed1ab_0 - werkzeug=3.0.1=pyhd8ed1ab_0 - wheel=0.42.0=pyhd8ed1ab_0 - wrapt=1.16.0=py310h2372a71_0 + - xcb-util=0.4.0=h516909a_0 + - xcb-util-image=0.4.0=h166bdaf_0 + - xcb-util-keysyms=0.4.0=h516909a_0 + - xcb-util-renderutil=0.3.9=h166bdaf_0 + - xcb-util-wm=0.4.1=h516909a_0 + - xkeyboard-config=2.38=h0b41bf4_0 - xorg-kbproto=1.0.7=h7f98852_1002 - xorg-libice=1.1.1=hd590300_0 - xorg-libsm=1.2.4=h7391055_0 @@ -227,6 +301,7 @@ dependencies: - xorg-xproto=7.0.31=h7f98852_1007 - xz=5.2.6=h166bdaf_0 - yarl=1.9.4=py310h2372a71_0 + - zip=3.0=hd590300_3 - zipp=3.17.0=pyhd8ed1ab_0 - zlib=1.2.13=hd590300_5 - zstd=1.5.5=hfc55251_0 @@ -234,7 +309,7 @@ dependencies: - antlr4-python3-runtime==4.9.3 - assertpy==1.1 - configparser==6.0.1 - - dllogger==1.0.0 + - git+https://github.com/NVIDIA/dllogger.git@0540a43971f4a8a16693a9de9de73c1072020769 - docker-pycreds==0.4.0 - e3nn==0.3.3 - gitdb==4.0.11