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changed the make_ss script to only set the BLASTMAT variable if it has not already been set. This provides the freedom to use a blast that hasn't been installed in the main directory

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Brandon Frenz 2024-05-20 11:45:29 -07:00
parent fa35433f8b
commit 64da0dcf4a
1 changed files with 3 additions and 1 deletions
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4
input_prep/make_ss.sh
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@ -1,7 +1,9 @@
#!/bin/bash #!/bin/bash
# From: https://github.com/RosettaCommons/RoseTTAFold # From: https://github.com/RosettaCommons/RoseTTAFold
export BLASTMAT=$PIPE_DIR/blast-2.2.26/data/ if [ -z "${BLASTMAT}" ]; then
export BLASTMAT=$PIPE_DIR/blast-2.2.26/data/
fi
DATADIR="$CONDA_PREFIX/share/psipred_4.01/data" DATADIR="$CONDA_PREFIX/share/psipred_4.01/data"
echo $DATADIR echo $DATADIR