diff --git a/README.md b/README.md index 5b3194f..33ca254 100644 --- a/README.md +++ b/README.md @@ -70,12 +70,13 @@ wget https://bfd.mmseqs.com/bfd_metaclust_clu_complete_id30_c90_final_seq.sorted mkdir -p bfd tar xfz bfd_metaclust_clu_complete_id30_c90_final_seq.sorted_opt.tar.gz -C ./bfd -# structure templates (including *_a3m.ffdata, *_a3m.ffindex) +# structure templates [81G] (including *_a3m.ffdata, *_a3m.ffindex) wget https://files.ipd.uw.edu/pub/RoseTTAFold/pdb100_2021Mar03.tar.gz tar xfz pdb100_2021Mar03.tar.gz ``` -8. Download BLAST +8. Download BLAST [39M] + ``` wget https://ftp.ncbi.nlm.nih.gov/blast/executables/legacy.NOTSUPPORTED/2.2.26/blast-2.2.26-x64-linux.tar.gz mkdir -p blast-2.2.26 diff --git a/rf2aa/data/parsers.py b/rf2aa/data/parsers.py index 86f8ac0..f402151 100644 --- a/rf2aa/data/parsers.py +++ b/rf2aa/data/parsers.py @@ -227,7 +227,7 @@ def parse_multichain_fasta(filename, maxseq=10000, rna_alphabet=False, dna_alph # convert letters into numbers if rna_alphabet: - alphabet = np.array(list("00000000000000000000-000000ACGTN"), dtype='|S1').view(np.uint8) + alphabet = np.array(list("00000000000000000000-000000ACGUN"), dtype='|S1').view(np.uint8) elif dna_alphabet: alphabet = np.array(list("00000000000000000000-0ACGTD00000"), dtype='|S1').view(np.uint8) else: