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Merge pull request #49 from seoklab/backport

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Fix some bugs in data handling code
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Rohith Krishna 2024-03-23 16:29:26 -07:00 committed by GitHub
commit b461e12016
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2 changed files with 3 additions and 3 deletions
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2
rf2aa/data/data_loader_utils.py
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@ -455,7 +455,7 @@ def merge_a3m_homo(msa_orig, ins_orig, nmer, mode="default"):
ins[N:, start:start+L] = ins_orig[1:] ins[N:, start:start+L] = ins_orig[1:]
start += L start += L
return msa, ins return {"msa": msa, "ins": ins}
def merge_msas(a3m_list, L_s): def merge_msas(a3m_list, L_s):
""" """

4
rf2aa/data/merge_inputs.py
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@ -43,8 +43,8 @@ def merge_protein_inputs(protein_inputs, deterministic: bool = False):
if len(unique_a3m) >1: if len(unique_a3m) >1:
a3m_out = unique_a3m[0] a3m_out = unique_a3m[0]
for i in range(1, len(unique_a3m)): for unq_a3m in unique_a3m[1:]:
a3m_out = join_msas_by_taxid(a3m_out, a3m_list[i]) a3m_out = join_msas_by_taxid(a3m_out, unq_a3m)
a3m_out = expand_multi_msa(a3m_out, unique_hashes, hash_list, unique_lengths_list, lengths_list) a3m_out = expand_multi_msa(a3m_out, unique_hashes, hash_list, unique_lengths_list, lengths_list)
else: else:
a3m = unique_a3m[0] a3m = unique_a3m[0]