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Merge pull request #127 from clami66/fix_rna

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Fix issue in complexes with RNA structures
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Rohith Krishna 2024-06-12 17:44:46 -07:00 committed by GitHub
parent bf214835d6 a7afaf0b83
commit c1fd92455b
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rf2aa/data/parsers.py
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@ -227,7 +227,7 @@ def parse_multichain_fasta(filename, maxseq=10000, rna_alphabet=False, dna_alph
# convert letters into numbers # convert letters into numbers
if rna_alphabet: if rna_alphabet:
alphabet = np.array(list("00000000000000000000-000000ACGTN"), dtype='|S1').view(np.uint8) alphabet = np.array(list("00000000000000000000-000000ACGUN"), dtype='|S1').view(np.uint8)
elif dna_alphabet: elif dna_alphabet:
alphabet = np.array(list("00000000000000000000-0ACGTD00000"), dtype='|S1').view(np.uint8) alphabet = np.array(list("00000000000000000000-0ACGTD00000"), dtype='|S1').view(np.uint8)
else: else: