diff --git a/README.md b/README.md index e2b2916..718a11e 100644 --- a/README.md +++ b/README.md @@ -42,15 +42,23 @@ pip3 install --no-cache-dir -r requirements.txt python3 setup.py install cd ../../ ``` -4. Install input preparation dependencies +4. Configure signalp6 after downloading a licensed copy of it from https://services.healthtech.dtu.dk/services/SignalP-6.0/ +``` +# NOTE: (current) version 6.0h is used in this example, which was downloaded to the current working directory using `wget` +signalp6-register signalp-6.0h.fast.tar.gz + +# NOTE: once registration is complete, one must rename the "distilled" model weights +mv $CONDA_PREFIX/lib/python3.10/site-packages/signalp/model_weights/distilled_model_signalp6.pt $CONDA_PREFIX/lib/python3.10/site-packages/signalp/model_weights/ensemble_model_signalp6.pt +``` +5. Install input preparation dependencies ``` bash install_dependencies.sh ``` -5. Download the model weights. +6. Download the model weights. ``` wget http://files.ipd.uw.edu/pub/RF-All-Atom/weights/RFAA_paper_weights.pt ``` -6. Download sequence databases for MSA and template generation. +7. Download sequence databases for MSA and template generation. ``` # uniref30 [46G] wget http://wwwuser.gwdg.de/~compbiol/uniclust/2020_06/UniRef30_2020_06_hhsuite.tar.gz