lib/storage: remove prioritizing of merging small parts over merging big parts, since it doesn't work as expected

The prioritizing could lead to big merge starvation, which could end up in too big number of parts that must be merged into big parts.

Multiple big merges may be initiated after the migration from v1.39.0 or v1.39.1. It is OK - these merges should be finished soon,
which should return CPU and disk IO usage to normal levels.

Updates https://github.com/VictoriaMetrics/VictoriaMetrics/issues/648
Updates https://github.com/VictoriaMetrics/VictoriaMetrics/issues/618
This commit is contained in:
Aliaksandr Valialkin 2020-07-30 19:57:25 +03:00
parent 96039dcb40
commit 29bbab0ec9
12 changed files with 61 additions and 77 deletions

View file

@ -363,9 +363,6 @@ func registerStorageMetrics(strg *storage.Storage) {
metrics.NewGauge(`vm_search_delays_total`, func() float64 {
return float64(m().SearchDelays)
})
metrics.NewGauge(`vm_big_merges_delays_total`, func() float64 {
return float64(tm().BigMergesDelays)
})
metrics.NewGauge(`vm_slow_row_inserts_total`, func() float64 {
return float64(m().SlowRowInserts)

View file

@ -7,7 +7,6 @@ import (
"sync/atomic"
"github.com/VictoriaMetrics/VictoriaMetrics/lib/logger"
"github.com/VictoriaMetrics/VictoriaMetrics/lib/pacelimiter"
)
// PrepareBlockCallback can transform the passed items allocated at the given data.
@ -29,9 +28,9 @@ type PrepareBlockCallback func(data []byte, items [][]byte) ([]byte, [][]byte)
//
// It also atomically adds the number of items merged to itemsMerged.
func mergeBlockStreams(ph *partHeader, bsw *blockStreamWriter, bsrs []*blockStreamReader, prepareBlock PrepareBlockCallback, stopCh <-chan struct{},
pl *pacelimiter.PaceLimiter, itemsMerged *uint64) error {
itemsMerged *uint64) error {
bsm := bsmPool.Get().(*blockStreamMerger)
if err := bsm.Init(bsrs, prepareBlock, pl); err != nil {
if err := bsm.Init(bsrs, prepareBlock); err != nil {
return fmt.Errorf("cannot initialize blockStreamMerger: %w", err)
}
err := bsm.Merge(bsw, ph, stopCh, itemsMerged)
@ -63,9 +62,6 @@ type blockStreamMerger struct {
phFirstItemCaught bool
// optional pace limiter for merge process.
pl *pacelimiter.PaceLimiter
// This are auxiliary buffers used in flushIB
// for consistency checks after prepareBlock call.
firstItem []byte
@ -82,13 +78,11 @@ func (bsm *blockStreamMerger) reset() {
bsm.ib.Reset()
bsm.phFirstItemCaught = false
bsm.pl = nil
}
func (bsm *blockStreamMerger) Init(bsrs []*blockStreamReader, prepareBlock PrepareBlockCallback, pl *pacelimiter.PaceLimiter) error {
func (bsm *blockStreamMerger) Init(bsrs []*blockStreamReader, prepareBlock PrepareBlockCallback) error {
bsm.reset()
bsm.prepareBlock = prepareBlock
bsm.pl = pl
for _, bsr := range bsrs {
if bsr.Next() {
bsm.bsrHeap = append(bsm.bsrHeap, bsr)
@ -111,9 +105,6 @@ var errForciblyStopped = fmt.Errorf("forcibly stopped")
func (bsm *blockStreamMerger) Merge(bsw *blockStreamWriter, ph *partHeader, stopCh <-chan struct{}, itemsMerged *uint64) error {
again:
if bsm.pl != nil {
bsm.pl.WaitIfNeeded()
}
if len(bsm.bsrHeap) == 0 {
// Write the last (maybe incomplete) inmemoryBlock to bsw.
bsm.flushIB(bsw, ph, itemsMerged)

View file

@ -7,8 +7,6 @@ import (
"sort"
"testing"
"time"
"github.com/VictoriaMetrics/VictoriaMetrics/lib/storagepacelimiter"
)
func TestMergeBlockStreams(t *testing.T) {
@ -32,14 +30,14 @@ func TestMultilevelMerge(t *testing.T) {
var dstIP1 inmemoryPart
var bsw1 blockStreamWriter
bsw1.InitFromInmemoryPart(&dstIP1)
if err := mergeBlockStreams(&dstIP1.ph, &bsw1, bsrs[:5], nil, nil, nil, &itemsMerged); err != nil {
if err := mergeBlockStreams(&dstIP1.ph, &bsw1, bsrs[:5], nil, nil, &itemsMerged); err != nil {
t.Fatalf("cannot merge first level part 1: %s", err)
}
var dstIP2 inmemoryPart
var bsw2 blockStreamWriter
bsw2.InitFromInmemoryPart(&dstIP2)
if err := mergeBlockStreams(&dstIP2.ph, &bsw2, bsrs[5:], nil, nil, storagepacelimiter.BigMerges, &itemsMerged); err != nil {
if err := mergeBlockStreams(&dstIP2.ph, &bsw2, bsrs[5:], nil, nil, &itemsMerged); err != nil {
t.Fatalf("cannot merge first level part 2: %s", err)
}
@ -56,7 +54,7 @@ func TestMultilevelMerge(t *testing.T) {
newTestBlockStreamReader(&dstIP2),
}
bsw.InitFromInmemoryPart(&dstIP)
if err := mergeBlockStreams(&dstIP.ph, &bsw, bsrsTop, nil, nil, storagepacelimiter.BigMerges, &itemsMerged); err != nil {
if err := mergeBlockStreams(&dstIP.ph, &bsw, bsrsTop, nil, nil, &itemsMerged); err != nil {
t.Fatalf("cannot merge second level: %s", err)
}
if itemsMerged != uint64(len(items)) {
@ -78,7 +76,7 @@ func TestMergeForciblyStop(t *testing.T) {
ch := make(chan struct{})
var itemsMerged uint64
close(ch)
if err := mergeBlockStreams(&dstIP.ph, &bsw, bsrs, nil, ch, nil, &itemsMerged); err != errForciblyStopped {
if err := mergeBlockStreams(&dstIP.ph, &bsw, bsrs, nil, ch, &itemsMerged); err != errForciblyStopped {
t.Fatalf("unexpected error during merge: got %v; want %v", err, errForciblyStopped)
}
if itemsMerged != 0 {
@ -122,7 +120,7 @@ func testMergeBlockStreamsSerial(blocksToMerge, maxItemsPerBlock int) error {
var dstIP inmemoryPart
var bsw blockStreamWriter
bsw.InitFromInmemoryPart(&dstIP)
if err := mergeBlockStreams(&dstIP.ph, &bsw, bsrs, nil, nil, storagepacelimiter.BigMerges, &itemsMerged); err != nil {
if err := mergeBlockStreams(&dstIP.ph, &bsw, bsrs, nil, nil, &itemsMerged); err != nil {
return fmt.Errorf("cannot merge block streams: %w", err)
}
if itemsMerged != uint64(len(items)) {

View file

@ -150,7 +150,7 @@ func newTestPart(blocksCount, maxItemsPerBlock int) (*part, []string, error) {
var ip inmemoryPart
var bsw blockStreamWriter
bsw.InitFromInmemoryPart(&ip)
if err := mergeBlockStreams(&ip.ph, &bsw, bsrs, nil, nil, nil, &itemsMerged); err != nil {
if err := mergeBlockStreams(&ip.ph, &bsw, bsrs, nil, nil, &itemsMerged); err != nil {
return nil, nil, fmt.Errorf("cannot merge blocks: %w", err)
}
if itemsMerged != uint64(len(items)) {

View file

@ -635,11 +635,7 @@ func (tb *Table) mergeInmemoryBlocks(blocksToMerge []*inmemoryBlock) *partWrappe
// Merge parts.
// The merge shouldn't be interrupted by stopCh,
// since it may be final after stopCh is closed.
//
// Prioritize merging of inmemory blocks over merging file parts.
storagepacelimiter.BigMerges.Inc()
err := mergeBlockStreams(&mpDst.ph, bsw, bsrs, tb.prepareBlock, nil, nil, &tb.itemsMerged)
storagepacelimiter.BigMerges.Dec()
err := mergeBlockStreams(&mpDst.ph, bsw, bsrs, tb.prepareBlock, nil, &tb.itemsMerged)
if err != nil {
logger.Panicf("FATAL: cannot merge inmemoryBlocks: %s", err)
}
@ -801,7 +797,7 @@ func (tb *Table) mergeParts(pws []*partWrapper, stopCh <-chan struct{}, isOuterP
// Merge parts into a temporary location.
var ph partHeader
err := mergeBlockStreams(&ph, bsw, bsrs, tb.prepareBlock, stopCh, storagepacelimiter.BigMerges, &tb.itemsMerged)
err := mergeBlockStreams(&ph, bsw, bsrs, tb.prepareBlock, stopCh, &tb.itemsMerged)
putBlockStreamWriter(bsw)
if err != nil {
if err == errForciblyStopped {
@ -949,9 +945,7 @@ func (tb *Table) maxOutPartItemsSlow() uint64 {
return freeSpace / uint64(mergeWorkersCount) / 4
}
var mergeWorkersCount = func() int {
return runtime.GOMAXPROCS(-1)
}()
var mergeWorkersCount = runtime.GOMAXPROCS(-1)
func openParts(path string) ([]*partWrapper, error) {
// The path can be missing after restoring from backup, so create it if needed.

View file

@ -1,6 +1,7 @@
package pacelimiter
import (
"fmt"
"runtime"
"sync"
"testing"
@ -73,6 +74,43 @@ func TestPacelimiter(t *testing.T) {
}
// Verify that the pl is unblocked now.
pl.WaitIfNeeded()
// Verify that negative count doesn't block pl.
pl.Dec()
pl.WaitIfNeeded()
if n := pl.DelaysTotal(); n == 0 {
t.Fatalf("expecting non-zero number of delays after subsequent pl.Dec()")
}
})
t.Run("negative_count", func(t *testing.T) {
n := 10
pl := New()
for i := 0; i < n; i++ {
pl.Dec()
}
doneCh := make(chan error)
go func() {
defer close(doneCh)
for i := 0; i < n; i++ {
pl.Inc()
pl.WaitIfNeeded()
if n := pl.DelaysTotal(); n != 0 {
doneCh <- fmt.Errorf("expecting zero number of delays")
return
}
}
doneCh <- nil
}()
select {
case err := <-doneCh:
if err != nil {
t.Fatalf("unexpected error: %s", err)
}
case <-time.After(5 * time.Second):
t.Fatalf("timeout")
}
})
t.Run("concurrent_inc_dec", func(t *testing.T) {
pl := New()

View file

@ -4,8 +4,6 @@ import (
"container/heap"
"fmt"
"io"
"github.com/VictoriaMetrics/VictoriaMetrics/lib/pacelimiter"
)
// blockStreamMerger is used for merging block streams.
@ -18,9 +16,6 @@ type blockStreamMerger struct {
// Whether the call to NextBlock must be no-op.
nextBlockNoop bool
// Optional pace limiter for limiting the pace for NextBlock calls.
pl *pacelimiter.PaceLimiter
// The last error
err error
}
@ -32,14 +27,11 @@ func (bsm *blockStreamMerger) reset() {
}
bsm.bsrHeap = bsm.bsrHeap[:0]
bsm.nextBlockNoop = false
bsm.pl = nil
bsm.err = nil
}
// Init initializes bsm with the given bsrs.
//
// pl is an optional pace limiter, which allows limiting the pace for NextBlock calls.
func (bsm *blockStreamMerger) Init(bsrs []*blockStreamReader, pl *pacelimiter.PaceLimiter) {
func (bsm *blockStreamMerger) Init(bsrs []*blockStreamReader) {
bsm.reset()
for _, bsr := range bsrs {
if bsr.NextBlock() {
@ -60,7 +52,6 @@ func (bsm *blockStreamMerger) Init(bsrs []*blockStreamReader, pl *pacelimiter.Pa
heap.Init(&bsm.bsrHeap)
bsm.Block = &bsm.bsrHeap[0].Block
bsm.nextBlockNoop = true
bsm.pl = pl
}
// NextBlock stores the next block in bsm.Block.
@ -75,9 +66,6 @@ func (bsm *blockStreamMerger) NextBlock() bool {
bsm.nextBlockNoop = false
return true
}
if bsm.pl != nil {
bsm.pl.WaitIfNeeded()
}
bsm.err = bsm.nextBlock()
switch bsm.err {

View file

@ -6,7 +6,6 @@ import (
"github.com/VictoriaMetrics/VictoriaMetrics/lib/decimal"
"github.com/VictoriaMetrics/VictoriaMetrics/lib/logger"
"github.com/VictoriaMetrics/VictoriaMetrics/lib/pacelimiter"
"github.com/VictoriaMetrics/VictoriaMetrics/lib/uint64set"
)
@ -16,11 +15,11 @@ import (
//
// rowsMerged is atomically updated with the number of merged rows during the merge.
func mergeBlockStreams(ph *partHeader, bsw *blockStreamWriter, bsrs []*blockStreamReader, stopCh <-chan struct{},
pl *pacelimiter.PaceLimiter, dmis *uint64set.Set, rowsMerged, rowsDeleted *uint64) error {
dmis *uint64set.Set, rowsMerged, rowsDeleted *uint64) error {
ph.Reset()
bsm := bsmPool.Get().(*blockStreamMerger)
bsm.Init(bsrs, pl)
bsm.Init(bsrs)
err := mergeBlockStreamsInternal(ph, bsw, bsm, stopCh, dmis, rowsMerged, rowsDeleted)
bsm.reset()
bsmPool.Put(bsm)

View file

@ -3,8 +3,6 @@ package storage
import (
"math/rand"
"testing"
"github.com/VictoriaMetrics/VictoriaMetrics/lib/storagepacelimiter"
)
func TestMergeBlockStreamsOneStreamOneRow(t *testing.T) {
@ -366,7 +364,7 @@ func TestMergeForciblyStop(t *testing.T) {
ch := make(chan struct{})
var rowsMerged, rowsDeleted uint64
close(ch)
if err := mergeBlockStreams(&mp.ph, &bsw, bsrs, ch, nil, nil, &rowsMerged, &rowsDeleted); err != errForciblyStopped {
if err := mergeBlockStreams(&mp.ph, &bsw, bsrs, ch, nil, &rowsMerged, &rowsDeleted); err != errForciblyStopped {
t.Fatalf("unexpected error in mergeBlockStreams: got %v; want %v", err, errForciblyStopped)
}
if rowsMerged != 0 {
@ -386,7 +384,7 @@ func testMergeBlockStreams(t *testing.T, bsrs []*blockStreamReader, expectedBloc
bsw.InitFromInmemoryPart(&mp)
var rowsMerged, rowsDeleted uint64
if err := mergeBlockStreams(&mp.ph, &bsw, bsrs, nil, storagepacelimiter.BigMerges, nil, &rowsMerged, &rowsDeleted); err != nil {
if err := mergeBlockStreams(&mp.ph, &bsw, bsrs, nil, nil, &rowsMerged, &rowsDeleted); err != nil {
t.Fatalf("unexpected error in mergeBlockStreams: %s", err)
}

View file

@ -41,7 +41,7 @@ func benchmarkMergeBlockStreams(b *testing.B, mps []*inmemoryPart, rowsPerLoop i
}
mpOut.Reset()
bsw.InitFromInmemoryPart(&mpOut)
if err := mergeBlockStreams(&mpOut.ph, &bsw, bsrs, nil, nil, nil, &rowsMerged, &rowsDeleted); err != nil {
if err := mergeBlockStreams(&mpOut.ph, &bsw, bsrs, nil, nil, &rowsMerged, &rowsDeleted); err != nil {
panic(fmt.Errorf("cannot merge block streams: %w", err))
}
}

View file

@ -329,7 +329,6 @@ type partitionMetrics struct {
SmallPartsRefCount uint64
SmallAssistedMerges uint64
BigMergesDelays uint64
}
// UpdateMetrics updates m with metrics from pt.
@ -388,8 +387,6 @@ func (pt *partition) UpdateMetrics(m *partitionMetrics) {
m.SmallRowsDeleted += atomic.LoadUint64(&pt.smallRowsDeleted)
m.SmallAssistedMerges += atomic.LoadUint64(&pt.smallAssistedMerges)
m.BigMergesDelays = storagepacelimiter.BigMerges.DelaysTotal()
}
// AddRows adds the given rows to the partition pt.
@ -817,13 +814,7 @@ func (pt *partition) mergePartsOptimal(pws []*partWrapper) error {
return nil
}
var mergeWorkersCount = func() int {
n := runtime.GOMAXPROCS(-1) / 2
if n <= 0 {
n = 1
}
return n
}()
var mergeWorkersCount = runtime.GOMAXPROCS(-1)
var (
bigMergeConcurrencyLimitCh = make(chan struct{}, mergeWorkersCount)
@ -935,10 +926,9 @@ func maxRowsByPath(path string) uint64 {
// Calculate the maximum number of rows in the output merge part
// by dividing the freeSpace by the number of concurrent
// mergeWorkersCount for big parts.
// This assumes each row is compressed into 1 byte. Production
// simulation shows that each row usually occupies up to 0.5 bytes,
// so this is quite safe assumption.
maxRows := freeSpace / uint64(mergeWorkersCount)
// This assumes each row is compressed into 0.5 bytes
// according to production data.
maxRows := 2 * (freeSpace / uint64(mergeWorkersCount))
if maxRows > maxRowsPerBigPart {
maxRows = maxRowsPerBigPart
}
@ -1058,25 +1048,21 @@ func (pt *partition) mergeParts(pws []*partWrapper, stopCh <-chan struct{}) erro
var ph partHeader
rowsMerged := &pt.smallRowsMerged
rowsDeleted := &pt.smallRowsDeleted
pl := storagepacelimiter.BigMerges
if isBigPart {
rowsMerged = &pt.bigRowsMerged
rowsDeleted = &pt.bigRowsDeleted
atomic.AddUint64(&pt.bigMergesCount, 1)
atomic.AddUint64(&pt.activeBigMerges, 1)
} else {
pl = nil
atomic.AddUint64(&pt.smallMergesCount, 1)
atomic.AddUint64(&pt.activeSmallMerges, 1)
// Prioritize small merges over big merges.
storagepacelimiter.BigMerges.Inc()
}
err := mergeBlockStreams(&ph, bsw, bsrs, stopCh, pl, dmis, rowsMerged, rowsDeleted)
err := mergeBlockStreams(&ph, bsw, bsrs, stopCh, dmis, rowsMerged, rowsDeleted)
if isBigPart {
atomic.AddUint64(&pt.activeBigMerges, ^uint64(0))
} else {
atomic.AddUint64(&pt.activeSmallMerges, ^uint64(0))
storagepacelimiter.BigMerges.Dec()
}
putBlockStreamWriter(bsw)
if err != nil {

View file

@ -8,8 +8,3 @@ import (
//
// See https://github.com/VictoriaMetrics/VictoriaMetrics/issues/291
var Search = pacelimiter.New()
// BigMerges limits the pace for big merges when there is at least a single in-flight small merge.
//
// See https://github.com/VictoriaMetrics/VictoriaMetrics/issues/648
var BigMerges = pacelimiter.New()