VictoriaMetrics/lib/mergeset/table.go
Aliaksandr Valialkin 1b16118e17
lib/{storage,mergeset}: tune the threshold for assisted merge
The https://github.com/VictoriaMetrics/VictoriaMetrics/issues/3425#issuecomment-1359117221
reveals that CPU usage for incoming queries may significantly increase when the number
of in-memory parts becomes too big.

This commit reduces the maximum number of in-memory parts before starting the assisted merge
during data ingestion. This should reduce CPU usage for incoming queries,
since they need to inspect lower number of in-memory parts.

This should help https://github.com/VictoriaMetrics/VictoriaMetrics/issues/3425
2022-12-28 14:39:24 -08:00

1821 lines
49 KiB
Go

package mergeset
import (
"errors"
"fmt"
"os"
"path/filepath"
"sort"
"strings"
"sync"
"sync/atomic"
"time"
"unsafe"
"github.com/VictoriaMetrics/VictoriaMetrics/lib/bytesutil"
"github.com/VictoriaMetrics/VictoriaMetrics/lib/cgroup"
"github.com/VictoriaMetrics/VictoriaMetrics/lib/fasttime"
"github.com/VictoriaMetrics/VictoriaMetrics/lib/fs"
"github.com/VictoriaMetrics/VictoriaMetrics/lib/logger"
"github.com/VictoriaMetrics/VictoriaMetrics/lib/memory"
"github.com/VictoriaMetrics/VictoriaMetrics/lib/storagepacelimiter"
"github.com/VictoriaMetrics/VictoriaMetrics/lib/syncwg"
)
// maxInmemoryParts is the maximum number of inmemory parts in the table.
//
// This number may be reached when the insertion pace outreaches merger pace.
// If this number is reached, then assisted merges are performed
// during data ingestion.
const maxInmemoryParts = 30
// maxFileParts is the maximum number of file parts in the table.
//
// This number may be reached when the insertion pace outreaches merger pace.
// If this number is reached, then assisted merges are performed
// during data ingestion.
const maxFileParts = 64
// Default number of parts to merge at once.
//
// This number has been obtained empirically - it gives the lowest possible overhead.
// See appendPartsToMerge tests for details.
const defaultPartsToMerge = 15
// The final number of parts to merge at once.
//
// It must be smaller than defaultPartsToMerge.
// Lower value improves select performance at the cost of increased
// write amplification.
const finalPartsToMerge = 2
// maxPartSize is the maximum part size in bytes.
//
// This number should be limited by the amount of time required to merge parts of this summary size.
// The required time shouldn't exceed a day.
const maxPartSize = 400e9
// The interval for flushing buffered data to parts, so it becomes visible to search.
const pendingItemsFlushInterval = time.Second
// The interval for guaranteed flush of recently ingested data from memory to on-disk parts,
// so they survive process crash.
var dataFlushInterval = 5 * time.Second
// SetDataFlushInterval sets the interval for guaranteed flush of recently ingested data from memory to disk.
//
// The data can be flushed from memory to disk more frequently if it doesn't fit the memory limit.
//
// This function must be called before initializing the indexdb.
func SetDataFlushInterval(d time.Duration) {
if d > pendingItemsFlushInterval {
dataFlushInterval = d
}
}
// maxItemsPerCachedPart is the maximum items per created part by the merge,
// which must be cached in the OS page cache.
//
// Such parts are usually frequently accessed, so it is good to cache their
// contents in OS page cache.
func maxItemsPerCachedPart() uint64 {
mem := memory.Remaining()
// Production data shows that each item occupies ~4 bytes in the compressed part.
// It is expected no more than defaultPartsToMerge/2 parts exist
// in the OS page cache before they are merged into bigger part.
// Halft of the remaining RAM must be left for lib/storage parts,
// so the maxItems is calculated using the below code:
maxItems := uint64(mem) / (4 * defaultPartsToMerge)
if maxItems < 1e6 {
maxItems = 1e6
}
return maxItems
}
// Table represents mergeset table.
type Table struct {
// Atomically updated counters must go first in the struct, so they are properly
// aligned to 8 bytes on 32-bit architectures.
// See https://github.com/VictoriaMetrics/VictoriaMetrics/issues/212
activeInmemoryMerges uint64
activeFileMerges uint64
inmemoryMergesCount uint64
fileMergesCount uint64
inmemoryItemsMerged uint64
fileItemsMerged uint64
inmemoryAssistedMerges uint64
fileAssistedMerges uint64
itemsAdded uint64
itemsAddedSizeBytes uint64
mergeIdx uint64
path string
flushCallback func()
flushCallbackWorkerWG sync.WaitGroup
needFlushCallbackCall uint32
prepareBlock PrepareBlockCallback
isReadOnly *uint32
// rawItems contains recently added items that haven't been converted to parts yet.
//
// rawItems aren't used in search for performance reasons
rawItems rawItemsShards
// partsLock protects inmemoryParts and fileParts.
partsLock sync.Mutex
// inmemoryParts contains inmemory parts.
inmemoryParts []*partWrapper
// fileParts contains file-backed parts.
fileParts []*partWrapper
snapshotLock sync.RWMutex
flockF *os.File
stopCh chan struct{}
wg sync.WaitGroup
// Use syncwg instead of sync, since Add/Wait may be called from concurrent goroutines.
rawItemsPendingFlushesWG syncwg.WaitGroup
}
type rawItemsShards struct {
shardIdx uint32
// shards reduce lock contention when adding rows on multi-CPU systems.
shards []rawItemsShard
}
// The number of shards for rawItems per table.
//
// Higher number of shards reduces CPU contention and increases the max bandwidth on multi-core systems.
var rawItemsShardsPerTable = func() int {
cpus := cgroup.AvailableCPUs()
multiplier := cpus
if multiplier > 16 {
multiplier = 16
}
return (cpus*multiplier + 1) / 2
}()
const maxBlocksPerShard = 256
func (riss *rawItemsShards) init() {
riss.shards = make([]rawItemsShard, rawItemsShardsPerTable)
}
func (riss *rawItemsShards) addItems(tb *Table, items [][]byte) {
shards := riss.shards
shardsLen := uint32(len(shards))
for len(items) > 0 {
n := atomic.AddUint32(&riss.shardIdx, 1)
idx := n % shardsLen
items = shards[idx].addItems(tb, items)
}
}
func (riss *rawItemsShards) Len() int {
n := 0
for i := range riss.shards {
n += riss.shards[i].Len()
}
return n
}
type rawItemsShardNopad struct {
// Put lastFlushTime to the top in order to avoid unaligned memory access on 32-bit architectures
lastFlushTime uint64
mu sync.Mutex
ibs []*inmemoryBlock
}
type rawItemsShard struct {
rawItemsShardNopad
// The padding prevents false sharing on widespread platforms with
// 128 mod (cache line size) = 0 .
_ [128 - unsafe.Sizeof(rawItemsShardNopad{})%128]byte
}
func (ris *rawItemsShard) Len() int {
ris.mu.Lock()
n := 0
for _, ib := range ris.ibs {
n += len(ib.items)
}
ris.mu.Unlock()
return n
}
func (ris *rawItemsShard) addItems(tb *Table, items [][]byte) [][]byte {
var ibsToFlush []*inmemoryBlock
var tailItems [][]byte
ris.mu.Lock()
ibs := ris.ibs
if len(ibs) == 0 {
ib := getInmemoryBlock()
ibs = append(ibs, ib)
ris.ibs = ibs
}
ib := ibs[len(ibs)-1]
for i, item := range items {
if ib.Add(item) {
continue
}
if len(ibs) >= maxBlocksPerShard {
ibsToFlush = ibs
ibs = make([]*inmemoryBlock, 0, maxBlocksPerShard)
tailItems = items[i:]
atomic.StoreUint64(&ris.lastFlushTime, fasttime.UnixTimestamp())
break
}
ib = getInmemoryBlock()
if ib.Add(item) {
ibs = append(ibs, ib)
continue
}
putInmemoryBlock(ib)
logger.Panicf("BUG: cannot insert too big item into an empty inmemoryBlock len(item)=%d; the caller should be responsible for avoiding too big items", len(item))
}
ris.ibs = ibs
ris.mu.Unlock()
tb.flushBlocksToParts(ibsToFlush, false)
return tailItems
}
type partWrapper struct {
p *part
mp *inmemoryPart
refCount uint64
isInMerge bool
// The deadline when the in-memory part must be flushed to disk.
flushToDiskDeadline time.Time
}
func (pw *partWrapper) incRef() {
atomic.AddUint64(&pw.refCount, 1)
}
func (pw *partWrapper) decRef() {
n := atomic.AddUint64(&pw.refCount, ^uint64(0))
if int64(n) < 0 {
logger.Panicf("BUG: pw.refCount must be bigger than 0; got %d", int64(n))
}
if n > 0 {
return
}
if pw.mp != nil {
// Do not return pw.mp to pool via putInmemoryPart(),
// since pw.mp size may be too big compared to other entries stored in the pool.
// This may result in increased memory usage because of high fragmentation.
pw.mp = nil
}
pw.p.MustClose()
pw.p = nil
}
// OpenTable opens a table on the given path.
//
// Optional flushCallback is called every time new data batch is flushed
// to the underlying storage and becomes visible to search.
//
// Optional prepareBlock is called during merge before flushing the prepared block
// to persistent storage.
//
// The table is created if it doesn't exist yet.
func OpenTable(path string, flushCallback func(), prepareBlock PrepareBlockCallback, isReadOnly *uint32) (*Table, error) {
path = filepath.Clean(path)
logger.Infof("opening table %q...", path)
startTime := time.Now()
// Create a directory for the table if it doesn't exist yet.
if err := fs.MkdirAllIfNotExist(path); err != nil {
return nil, fmt.Errorf("cannot create directory %q: %w", path, err)
}
// Protect from concurrent opens.
flockF, err := fs.CreateFlockFile(path)
if err != nil {
return nil, err
}
// Open table parts.
pws, err := openParts(path)
if err != nil {
return nil, fmt.Errorf("cannot open table parts at %q: %w", path, err)
}
tb := &Table{
path: path,
flushCallback: flushCallback,
prepareBlock: prepareBlock,
isReadOnly: isReadOnly,
fileParts: pws,
mergeIdx: uint64(time.Now().UnixNano()),
flockF: flockF,
stopCh: make(chan struct{}),
}
tb.rawItems.init()
tb.startBackgroundWorkers()
var m TableMetrics
tb.UpdateMetrics(&m)
logger.Infof("table %q has been opened in %.3f seconds; partsCount: %d; blocksCount: %d, itemsCount: %d; sizeBytes: %d",
path, time.Since(startTime).Seconds(), m.FilePartsCount, m.FileBlocksCount, m.FileItemsCount, m.FileSizeBytes)
if flushCallback != nil {
tb.flushCallbackWorkerWG.Add(1)
go func() {
// call flushCallback once per 10 seconds in order to improve the effectiveness of caches,
// which are reset by the flushCallback.
tc := time.NewTicker(10 * time.Second)
for {
select {
case <-tb.stopCh:
tb.flushCallback()
tb.flushCallbackWorkerWG.Done()
return
case <-tc.C:
if atomic.CompareAndSwapUint32(&tb.needFlushCallbackCall, 1, 0) {
tb.flushCallback()
}
}
}
}()
}
return tb, nil
}
func (tb *Table) startBackgroundWorkers() {
tb.startMergeWorkers()
tb.startInmemoryPartsFlusher()
tb.startPendingItemsFlusher()
}
// MustClose closes the table.
func (tb *Table) MustClose() {
close(tb.stopCh)
logger.Infof("waiting for background workers to stop on %q...", tb.path)
startTime := time.Now()
tb.wg.Wait()
logger.Infof("background workers stopped in %.3f seconds on %q", time.Since(startTime).Seconds(), tb.path)
logger.Infof("flushing inmemory parts to files on %q...", tb.path)
startTime = time.Now()
tb.flushInmemoryItems()
logger.Infof("inmemory parts have been successfully flushed to files in %.3f seconds at %q", time.Since(startTime).Seconds(), tb.path)
logger.Infof("waiting for flush callback worker to stop on %q...", tb.path)
startTime = time.Now()
tb.flushCallbackWorkerWG.Wait()
logger.Infof("flush callback worker stopped in %.3f seconds on %q", time.Since(startTime).Seconds(), tb.path)
// Remove references to parts from the tb, so they may be eventually closed after all the searches are done.
tb.partsLock.Lock()
inmemoryParts := tb.inmemoryParts
fileParts := tb.fileParts
tb.inmemoryParts = nil
tb.fileParts = nil
tb.partsLock.Unlock()
for _, pw := range inmemoryParts {
pw.decRef()
}
for _, pw := range fileParts {
pw.decRef()
}
// Release flockF
if err := tb.flockF.Close(); err != nil {
logger.Panicf("FATAL:cannot close %q: %s", tb.flockF.Name(), err)
}
}
// Path returns the path to tb on the filesystem.
func (tb *Table) Path() string {
return tb.path
}
// TableMetrics contains essential metrics for the Table.
type TableMetrics struct {
ActiveInmemoryMerges uint64
ActiveFileMerges uint64
InmemoryMergesCount uint64
FileMergesCount uint64
InmemoryItemsMerged uint64
FileItemsMerged uint64
InmemoryAssistedMerges uint64
FileAssistedMerges uint64
ItemsAdded uint64
ItemsAddedSizeBytes uint64
PendingItems uint64
InmemoryPartsCount uint64
FilePartsCount uint64
InmemoryBlocksCount uint64
FileBlocksCount uint64
InmemoryItemsCount uint64
FileItemsCount uint64
InmemorySizeBytes uint64
FileSizeBytes uint64
DataBlocksCacheSize uint64
DataBlocksCacheSizeBytes uint64
DataBlocksCacheSizeMaxBytes uint64
DataBlocksCacheRequests uint64
DataBlocksCacheMisses uint64
IndexBlocksCacheSize uint64
IndexBlocksCacheSizeBytes uint64
IndexBlocksCacheSizeMaxBytes uint64
IndexBlocksCacheRequests uint64
IndexBlocksCacheMisses uint64
PartsRefCount uint64
}
// TotalItemsCount returns the total number of items in the table.
func (tm *TableMetrics) TotalItemsCount() uint64 {
return tm.InmemoryItemsCount + tm.FileItemsCount
}
// UpdateMetrics updates m with metrics from tb.
func (tb *Table) UpdateMetrics(m *TableMetrics) {
m.ActiveInmemoryMerges += atomic.LoadUint64(&tb.activeInmemoryMerges)
m.ActiveFileMerges += atomic.LoadUint64(&tb.activeFileMerges)
m.InmemoryMergesCount += atomic.LoadUint64(&tb.inmemoryMergesCount)
m.FileMergesCount += atomic.LoadUint64(&tb.fileMergesCount)
m.InmemoryItemsMerged += atomic.LoadUint64(&tb.inmemoryItemsMerged)
m.FileItemsMerged += atomic.LoadUint64(&tb.fileItemsMerged)
m.InmemoryAssistedMerges += atomic.LoadUint64(&tb.inmemoryAssistedMerges)
m.FileAssistedMerges += atomic.LoadUint64(&tb.fileAssistedMerges)
m.ItemsAdded += atomic.LoadUint64(&tb.itemsAdded)
m.ItemsAddedSizeBytes += atomic.LoadUint64(&tb.itemsAddedSizeBytes)
m.PendingItems += uint64(tb.rawItems.Len())
tb.partsLock.Lock()
m.InmemoryPartsCount += uint64(len(tb.inmemoryParts))
for _, pw := range tb.inmemoryParts {
p := pw.p
m.InmemoryBlocksCount += p.ph.blocksCount
m.InmemoryItemsCount += p.ph.itemsCount
m.InmemorySizeBytes += p.size
m.PartsRefCount += atomic.LoadUint64(&pw.refCount)
}
m.FilePartsCount += uint64(len(tb.fileParts))
for _, pw := range tb.fileParts {
p := pw.p
m.FileBlocksCount += p.ph.blocksCount
m.FileItemsCount += p.ph.itemsCount
m.FileSizeBytes += p.size
m.PartsRefCount += atomic.LoadUint64(&pw.refCount)
}
tb.partsLock.Unlock()
m.DataBlocksCacheSize = uint64(ibCache.Len())
m.DataBlocksCacheSizeBytes = uint64(ibCache.SizeBytes())
m.DataBlocksCacheSizeMaxBytes = uint64(ibCache.SizeMaxBytes())
m.DataBlocksCacheRequests = ibCache.Requests()
m.DataBlocksCacheMisses = ibCache.Misses()
m.IndexBlocksCacheSize = uint64(idxbCache.Len())
m.IndexBlocksCacheSizeBytes = uint64(idxbCache.SizeBytes())
m.IndexBlocksCacheSizeMaxBytes = uint64(idxbCache.SizeMaxBytes())
m.IndexBlocksCacheRequests = idxbCache.Requests()
m.IndexBlocksCacheMisses = idxbCache.Misses()
}
// AddItems adds the given items to the tb.
//
// The function panics when items contains an item with length exceeding maxInmemoryBlockSize.
// It is caller's responsibility to make sure there are no too long items.
func (tb *Table) AddItems(items [][]byte) {
tb.rawItems.addItems(tb, items)
atomic.AddUint64(&tb.itemsAdded, uint64(len(items)))
n := 0
for _, item := range items {
n += len(item)
}
atomic.AddUint64(&tb.itemsAddedSizeBytes, uint64(n))
}
// getParts appends parts snapshot to dst and returns it.
//
// The appended parts must be released with putParts.
func (tb *Table) getParts(dst []*partWrapper) []*partWrapper {
tb.partsLock.Lock()
for _, pw := range tb.inmemoryParts {
pw.incRef()
}
for _, pw := range tb.fileParts {
pw.incRef()
}
dst = append(dst, tb.inmemoryParts...)
dst = append(dst, tb.fileParts...)
tb.partsLock.Unlock()
return dst
}
// putParts releases the given pws obtained via getParts.
func (tb *Table) putParts(pws []*partWrapper) {
for _, pw := range pws {
pw.decRef()
}
}
func (tb *Table) mergePartsOptimal(pws []*partWrapper) error {
sortPartsForOptimalMerge(pws)
for len(pws) > 0 {
n := defaultPartsToMerge
if n > len(pws) {
n = len(pws)
}
pwsChunk := pws[:n]
pws = pws[n:]
err := tb.mergeParts(pwsChunk, nil, true)
if err == nil {
continue
}
tb.releasePartsToMerge(pws)
return fmt.Errorf("cannot optimally merge %d parts: %w", n, err)
}
return nil
}
// DebugFlush flushes all the added items to the storage, so they become visible to search.
//
// This function is only for debugging and testing.
func (tb *Table) DebugFlush() {
tb.flushPendingItems(nil, true)
// Wait for background flushers to finish.
tb.rawItemsPendingFlushesWG.Wait()
}
func (tb *Table) startInmemoryPartsFlusher() {
tb.wg.Add(1)
go func() {
tb.inmemoryPartsFlusher()
tb.wg.Done()
}()
}
func (tb *Table) startPendingItemsFlusher() {
tb.wg.Add(1)
go func() {
tb.pendingItemsFlusher()
tb.wg.Done()
}()
}
func (tb *Table) inmemoryPartsFlusher() {
ticker := time.NewTicker(dataFlushInterval)
defer ticker.Stop()
for {
select {
case <-tb.stopCh:
return
case <-ticker.C:
tb.flushInmemoryParts(false)
}
}
}
func (tb *Table) pendingItemsFlusher() {
ticker := time.NewTicker(pendingItemsFlushInterval)
defer ticker.Stop()
var ibs []*inmemoryBlock
for {
select {
case <-tb.stopCh:
return
case <-ticker.C:
ibs = tb.flushPendingItems(ibs[:0], false)
for i := range ibs {
ibs[i] = nil
}
}
}
}
func (tb *Table) flushPendingItems(dst []*inmemoryBlock, isFinal bool) []*inmemoryBlock {
return tb.rawItems.flush(tb, dst, isFinal)
}
func (tb *Table) flushInmemoryItems() {
tb.rawItems.flush(tb, nil, true)
tb.flushInmemoryParts(true)
}
func (tb *Table) flushInmemoryParts(isFinal bool) {
for {
currentTime := time.Now()
var pws []*partWrapper
tb.partsLock.Lock()
for _, pw := range tb.inmemoryParts {
if !pw.isInMerge && (isFinal || pw.flushToDiskDeadline.Before(currentTime)) {
pw.isInMerge = true
pws = append(pws, pw)
}
}
tb.partsLock.Unlock()
if err := tb.mergePartsOptimal(pws); err != nil {
logger.Panicf("FATAL: cannot merge in-memory parts: %s", err)
}
if !isFinal {
return
}
tb.partsLock.Lock()
n := len(tb.inmemoryParts)
tb.partsLock.Unlock()
if n == 0 {
// All the in-memory parts were flushed to disk.
return
}
// Some parts weren't flushed to disk because they were being merged.
// Sleep for a while and try flushing them again.
time.Sleep(10 * time.Millisecond)
}
}
func (riss *rawItemsShards) flush(tb *Table, dst []*inmemoryBlock, isFinal bool) []*inmemoryBlock {
tb.rawItemsPendingFlushesWG.Add(1)
defer tb.rawItemsPendingFlushesWG.Done()
for i := range riss.shards {
dst = riss.shards[i].appendBlocksToFlush(dst, tb, isFinal)
}
tb.flushBlocksToParts(dst, isFinal)
return dst
}
func (ris *rawItemsShard) appendBlocksToFlush(dst []*inmemoryBlock, tb *Table, isFinal bool) []*inmemoryBlock {
currentTime := fasttime.UnixTimestamp()
flushSeconds := int64(pendingItemsFlushInterval.Seconds())
if flushSeconds <= 0 {
flushSeconds = 1
}
lastFlushTime := atomic.LoadUint64(&ris.lastFlushTime)
if !isFinal && currentTime < lastFlushTime+uint64(flushSeconds) {
// Fast path - nothing to flush
return dst
}
// Slow path - move ris.ibs to dst
ris.mu.Lock()
ibs := ris.ibs
dst = append(dst, ibs...)
for i := range ibs {
ibs[i] = nil
}
ris.ibs = ibs[:0]
atomic.StoreUint64(&ris.lastFlushTime, currentTime)
ris.mu.Unlock()
return dst
}
func (tb *Table) flushBlocksToParts(ibs []*inmemoryBlock, isFinal bool) {
if len(ibs) == 0 {
return
}
var pwsLock sync.Mutex
pws := make([]*partWrapper, 0, (len(ibs)+defaultPartsToMerge-1)/defaultPartsToMerge)
wg := getWaitGroup()
for len(ibs) > 0 {
n := defaultPartsToMerge
if n > len(ibs) {
n = len(ibs)
}
wg.Add(1)
flushConcurrencyCh <- struct{}{}
go func(ibsChunk []*inmemoryBlock) {
defer func() {
<-flushConcurrencyCh
wg.Done()
}()
pw := tb.createInmemoryPart(ibsChunk)
if pw == nil {
return
}
pwsLock.Lock()
pws = append(pws, pw)
pwsLock.Unlock()
}(ibs[:n])
ibs = ibs[n:]
}
wg.Wait()
putWaitGroup(wg)
tb.partsLock.Lock()
tb.inmemoryParts = append(tb.inmemoryParts, pws...)
tb.partsLock.Unlock()
flushConcurrencyCh <- struct{}{}
tb.assistedMergeForInmemoryParts()
tb.assistedMergeForFileParts()
<-flushConcurrencyCh
if tb.flushCallback != nil {
if isFinal {
tb.flushCallback()
} else {
atomic.CompareAndSwapUint32(&tb.needFlushCallbackCall, 0, 1)
}
}
}
var flushConcurrencyCh = make(chan struct{}, cgroup.AvailableCPUs())
func needAssistedMerge(pws []*partWrapper, maxParts int) bool {
if len(pws) < maxParts {
return false
}
return getNotInMergePartsCount(pws) >= defaultPartsToMerge
}
func (tb *Table) assistedMergeForInmemoryParts() {
for {
tb.partsLock.Lock()
needMerge := needAssistedMerge(tb.inmemoryParts, maxInmemoryParts)
tb.partsLock.Unlock()
if !needMerge {
return
}
// Prioritize assisted merges over searches.
storagepacelimiter.Search.Inc()
atomic.AddUint64(&tb.inmemoryAssistedMerges, 1)
err := tb.mergeInmemoryParts()
storagepacelimiter.Search.Dec()
if err == nil {
continue
}
if errors.Is(err, errNothingToMerge) || errors.Is(err, errForciblyStopped) {
return
}
logger.Panicf("FATAL: cannot assist with merging inmemory parts: %s", err)
}
}
func (tb *Table) assistedMergeForFileParts() {
for {
tb.partsLock.Lock()
needMerge := needAssistedMerge(tb.fileParts, maxFileParts)
tb.partsLock.Unlock()
if !needMerge {
return
}
// Prioritize assisted merges over searches.
storagepacelimiter.Search.Inc()
atomic.AddUint64(&tb.fileAssistedMerges, 1)
err := tb.mergeExistingParts(false)
storagepacelimiter.Search.Dec()
if err == nil {
continue
}
if errors.Is(err, errNothingToMerge) || errors.Is(err, errForciblyStopped) || errors.Is(err, errReadOnlyMode) {
return
}
logger.Panicf("FATAL: cannot assist with merging file parts: %s", err)
}
}
func getNotInMergePartsCount(pws []*partWrapper) int {
n := 0
for _, pw := range pws {
if !pw.isInMerge {
n++
}
}
return n
}
func getWaitGroup() *sync.WaitGroup {
v := wgPool.Get()
if v == nil {
return &sync.WaitGroup{}
}
return v.(*sync.WaitGroup)
}
func putWaitGroup(wg *sync.WaitGroup) {
wgPool.Put(wg)
}
var wgPool sync.Pool
func (tb *Table) createInmemoryPart(ibs []*inmemoryBlock) *partWrapper {
outItemsCount := uint64(0)
for _, ib := range ibs {
outItemsCount += uint64(ib.Len())
}
// Prepare blockStreamReaders for source blocks.
bsrs := make([]*blockStreamReader, 0, len(ibs))
for _, ib := range ibs {
if len(ib.items) == 0 {
continue
}
bsr := getBlockStreamReader()
bsr.InitFromInmemoryBlock(ib)
putInmemoryBlock(ib)
bsrs = append(bsrs, bsr)
}
if len(bsrs) == 0 {
return nil
}
flushToDiskDeadline := time.Now().Add(dataFlushInterval)
if len(bsrs) == 1 {
// Nothing to merge. Just return a single inmemory part.
bsr := bsrs[0]
mp := &inmemoryPart{}
mp.Init(&bsr.Block)
putBlockStreamReader(bsr)
return newPartWrapperFromInmemoryPart(mp, flushToDiskDeadline)
}
// Prepare blockStreamWriter for destination part.
compressLevel := getCompressLevel(outItemsCount)
bsw := getBlockStreamWriter()
mpDst := &inmemoryPart{}
bsw.InitFromInmemoryPart(mpDst, compressLevel)
// Merge parts.
// The merge shouldn't be interrupted by stopCh,
// since it may be final after stopCh is closed.
atomic.AddUint64(&tb.activeInmemoryMerges, 1)
err := mergeBlockStreams(&mpDst.ph, bsw, bsrs, tb.prepareBlock, nil, &tb.inmemoryItemsMerged)
atomic.AddUint64(&tb.activeInmemoryMerges, ^uint64(0))
atomic.AddUint64(&tb.inmemoryMergesCount, 1)
if err != nil {
logger.Panicf("FATAL: cannot merge inmemoryBlocks: %s", err)
}
putBlockStreamWriter(bsw)
for _, bsr := range bsrs {
putBlockStreamReader(bsr)
}
return newPartWrapperFromInmemoryPart(mpDst, flushToDiskDeadline)
}
func newPartWrapperFromInmemoryPart(mp *inmemoryPart, flushToDiskDeadline time.Time) *partWrapper {
p := mp.NewPart()
return &partWrapper{
p: p,
mp: mp,
refCount: 1,
flushToDiskDeadline: flushToDiskDeadline,
}
}
func (tb *Table) startMergeWorkers() {
// Start a merge worker per available CPU core.
// The actual number of concurrent merges is limited inside mergeWorker() below.
workersCount := cgroup.AvailableCPUs()
for i := 0; i < workersCount; i++ {
tb.wg.Add(1)
go func() {
tb.mergeWorker()
tb.wg.Done()
}()
}
}
func getMaxInmemoryPartSize() uint64 {
// Allow up to 5% of memory for in-memory parts.
n := uint64(0.05 * float64(memory.Allowed()) / maxInmemoryParts)
if n < 1e6 {
n = 1e6
}
return n
}
func (tb *Table) getMaxFilePartSize() uint64 {
n := fs.MustGetFreeSpace(tb.path)
// Divide free space by the max number of concurrent merges.
maxOutBytes := n / uint64(cap(mergeWorkersLimitCh))
if maxOutBytes > maxPartSize {
maxOutBytes = maxPartSize
}
return maxOutBytes
}
func (tb *Table) canBackgroundMerge() bool {
return atomic.LoadUint32(tb.isReadOnly) == 0
}
var errReadOnlyMode = fmt.Errorf("storage is in readonly mode")
func (tb *Table) mergeInmemoryParts() error {
maxOutBytes := tb.getMaxFilePartSize()
tb.partsLock.Lock()
pws := getPartsToMerge(tb.inmemoryParts, maxOutBytes, false)
tb.partsLock.Unlock()
return tb.mergeParts(pws, tb.stopCh, false)
}
func (tb *Table) mergeExistingParts(isFinal bool) error {
if !tb.canBackgroundMerge() {
// Do not perform background merge in read-only mode
// in order to prevent from disk space shortage.
// See https://github.com/VictoriaMetrics/VictoriaMetrics/issues/2603
return errReadOnlyMode
}
maxOutBytes := tb.getMaxFilePartSize()
tb.partsLock.Lock()
dst := make([]*partWrapper, 0, len(tb.inmemoryParts)+len(tb.fileParts))
dst = append(dst, tb.inmemoryParts...)
dst = append(dst, tb.fileParts...)
pws := getPartsToMerge(dst, maxOutBytes, isFinal)
tb.partsLock.Unlock()
return tb.mergeParts(pws, tb.stopCh, isFinal)
}
const (
minMergeSleepTime = 10 * time.Millisecond
maxMergeSleepTime = 10 * time.Second
)
func (tb *Table) mergeWorker() {
sleepTime := minMergeSleepTime
var lastMergeTime uint64
isFinal := false
t := time.NewTimer(sleepTime)
for {
// Limit the number of concurrent calls to mergeExistingParts, since the total number of merge workers
// across tables may exceed the the cap(mergeWorkersLimitCh).
mergeWorkersLimitCh <- struct{}{}
err := tb.mergeExistingParts(isFinal)
<-mergeWorkersLimitCh
if err == nil {
// Try merging additional parts.
sleepTime = minMergeSleepTime
lastMergeTime = fasttime.UnixTimestamp()
isFinal = false
continue
}
if errors.Is(err, errForciblyStopped) {
// The merger has been stopped.
return
}
if !errors.Is(err, errNothingToMerge) && !errors.Is(err, errReadOnlyMode) {
// Unexpected error.
logger.Panicf("FATAL: unrecoverable error when merging inmemory parts in %q: %s", tb.path, err)
}
if finalMergeDelaySeconds > 0 && fasttime.UnixTimestamp()-lastMergeTime > finalMergeDelaySeconds {
// We have free time for merging into bigger parts.
// This should improve select performance.
lastMergeTime = fasttime.UnixTimestamp()
isFinal = true
continue
}
// Nothing to merge. Sleep for a while and try again.
sleepTime *= 2
if sleepTime > maxMergeSleepTime {
sleepTime = maxMergeSleepTime
}
select {
case <-tb.stopCh:
return
case <-t.C:
t.Reset(sleepTime)
}
}
}
// Disable final merge by default, since it may lead to high disk IO and CPU usage
// after some inactivity time.
var finalMergeDelaySeconds = uint64(0)
// SetFinalMergeDelay sets the delay before doing final merge for Table without newly ingested data.
//
// This function may be called only before Table initialization.
func SetFinalMergeDelay(delay time.Duration) {
if delay <= 0 {
return
}
finalMergeDelaySeconds = uint64(delay.Seconds() + 1)
}
var errNothingToMerge = fmt.Errorf("nothing to merge")
func (tb *Table) releasePartsToMerge(pws []*partWrapper) {
tb.partsLock.Lock()
for _, pw := range pws {
if !pw.isInMerge {
logger.Panicf("BUG: missing isInMerge flag on the part %q", pw.p.path)
}
pw.isInMerge = false
}
tb.partsLock.Unlock()
}
// mergeParts merges pws to a single resulting part.
//
// Merging is immediately stopped if stopCh is closed.
//
// If isFinal is set, then the resulting part will be stored to disk.
//
// All the parts inside pws must have isInMerge field set to true.
func (tb *Table) mergeParts(pws []*partWrapper, stopCh <-chan struct{}, isFinal bool) error {
if len(pws) == 0 {
// Nothing to merge.
return errNothingToMerge
}
defer tb.releasePartsToMerge(pws)
startTime := time.Now()
// Initialize destination paths.
dstPartType := getDstPartType(pws, isFinal)
tmpPartPath, mergeIdx := tb.getDstPartPaths(dstPartType)
if isFinal && len(pws) == 1 && pws[0].mp != nil {
// Fast path: flush a single in-memory part to disk.
mp := pws[0].mp
if tmpPartPath == "" {
logger.Panicf("BUG: tmpPartPath must be non-empty")
}
if err := mp.StoreToDisk(tmpPartPath); err != nil {
return fmt.Errorf("cannot store in-memory part to %q: %w", tmpPartPath, err)
}
pwNew, err := tb.openCreatedPart(&mp.ph, pws, nil, tmpPartPath, mergeIdx)
if err != nil {
return fmt.Errorf("cannot atomically register the created part: %w", err)
}
tb.swapSrcWithDstParts(pws, pwNew, dstPartType)
return nil
}
// Prepare BlockStreamReaders for source parts.
bsrs, err := openBlockStreamReaders(pws)
if err != nil {
return err
}
closeBlockStreamReaders := func() {
for _, bsr := range bsrs {
putBlockStreamReader(bsr)
}
bsrs = nil
}
// Prepare BlockStreamWriter for destination part.
srcSize := uint64(0)
srcItemsCount := uint64(0)
srcBlocksCount := uint64(0)
for _, pw := range pws {
srcSize += pw.p.size
srcItemsCount += pw.p.ph.itemsCount
srcBlocksCount += pw.p.ph.blocksCount
}
compressLevel := getCompressLevel(srcItemsCount)
bsw := getBlockStreamWriter()
var mpNew *inmemoryPart
if dstPartType == partInmemory {
mpNew = &inmemoryPart{}
bsw.InitFromInmemoryPart(mpNew, compressLevel)
} else {
if tmpPartPath == "" {
logger.Panicf("BUG: tmpPartPath must be non-empty")
}
nocache := srcItemsCount > maxItemsPerCachedPart()
if err := bsw.InitFromFilePart(tmpPartPath, nocache, compressLevel); err != nil {
closeBlockStreamReaders()
return fmt.Errorf("cannot create destination part at %q: %w", tmpPartPath, err)
}
}
// Merge source parts to destination part.
ph, err := tb.mergePartsInternal(tmpPartPath, bsw, bsrs, dstPartType, stopCh)
putBlockStreamWriter(bsw)
closeBlockStreamReaders()
if err != nil {
return fmt.Errorf("cannot merge %d parts: %w", len(pws), err)
}
if mpNew != nil {
// Update partHeader for destination inmemory part after the merge.
mpNew.ph = *ph
}
// Atomically move the created part from tmpPartPath to its destination
// and swap the source parts with the newly created part.
pwNew, err := tb.openCreatedPart(ph, pws, mpNew, tmpPartPath, mergeIdx)
if err != nil {
return fmt.Errorf("cannot atomically register the created part: %w", err)
}
tb.swapSrcWithDstParts(pws, pwNew, dstPartType)
d := time.Since(startTime)
if d <= 30*time.Second {
return nil
}
// Log stats for long merges.
dstItemsCount := uint64(0)
dstBlocksCount := uint64(0)
dstSize := uint64(0)
dstPartPath := ""
if pwNew != nil {
pDst := pwNew.p
dstItemsCount = pDst.ph.itemsCount
dstBlocksCount = pDst.ph.blocksCount
dstSize = pDst.size
dstPartPath = pDst.path
}
durationSecs := d.Seconds()
itemsPerSec := int(float64(srcItemsCount) / durationSecs)
logger.Infof("merged (%d parts, %d items, %d blocks, %d bytes) into (1 part, %d items, %d blocks, %d bytes) in %.3f seconds at %d items/sec to %q",
len(pws), srcItemsCount, srcBlocksCount, srcSize, dstItemsCount, dstBlocksCount, dstSize, durationSecs, itemsPerSec, dstPartPath)
return nil
}
func getFlushToDiskDeadline(pws []*partWrapper) time.Time {
d := pws[0].flushToDiskDeadline
for _, pw := range pws[1:] {
if pw.flushToDiskDeadline.Before(d) {
d = pw.flushToDiskDeadline
}
}
return d
}
type partType int
var (
partInmemory = partType(0)
partFile = partType(1)
)
func getDstPartType(pws []*partWrapper, isFinal bool) partType {
dstPartSize := getPartsSize(pws)
if isFinal || dstPartSize > getMaxInmemoryPartSize() {
return partFile
}
if !areAllInmemoryParts(pws) {
// If at least a single source part is located in file,
// then the destination part must be in file for durability reasons.
return partFile
}
return partInmemory
}
func (tb *Table) getDstPartPaths(dstPartType partType) (string, uint64) {
tmpPartPath := ""
mergeIdx := tb.nextMergeIdx()
switch dstPartType {
case partInmemory:
case partFile:
tmpPartPath = fmt.Sprintf("%s/tmp/%016X", tb.path, mergeIdx)
default:
logger.Panicf("BUG: unknown partType=%d", dstPartType)
}
return tmpPartPath, mergeIdx
}
func openBlockStreamReaders(pws []*partWrapper) ([]*blockStreamReader, error) {
bsrs := make([]*blockStreamReader, 0, len(pws))
for _, pw := range pws {
bsr := getBlockStreamReader()
if pw.mp != nil {
bsr.InitFromInmemoryPart(pw.mp)
} else {
if err := bsr.InitFromFilePart(pw.p.path); err != nil {
for _, bsr := range bsrs {
putBlockStreamReader(bsr)
}
return nil, fmt.Errorf("cannot open source part for merging: %w", err)
}
}
bsrs = append(bsrs, bsr)
}
return bsrs, nil
}
func (tb *Table) mergePartsInternal(tmpPartPath string, bsw *blockStreamWriter, bsrs []*blockStreamReader, dstPartType partType, stopCh <-chan struct{}) (*partHeader, error) {
var ph partHeader
var itemsMerged *uint64
var mergesCount *uint64
var activeMerges *uint64
switch dstPartType {
case partInmemory:
itemsMerged = &tb.inmemoryItemsMerged
mergesCount = &tb.inmemoryMergesCount
activeMerges = &tb.activeInmemoryMerges
case partFile:
itemsMerged = &tb.fileItemsMerged
mergesCount = &tb.fileMergesCount
activeMerges = &tb.activeFileMerges
default:
logger.Panicf("BUG: unknown partType=%d", dstPartType)
}
atomic.AddUint64(activeMerges, 1)
err := mergeBlockStreams(&ph, bsw, bsrs, tb.prepareBlock, stopCh, itemsMerged)
atomic.AddUint64(activeMerges, ^uint64(0))
atomic.AddUint64(mergesCount, 1)
if err != nil {
return nil, fmt.Errorf("cannot merge parts to %q: %w", tmpPartPath, err)
}
if tmpPartPath != "" {
if err := ph.WriteMetadata(tmpPartPath); err != nil {
return nil, fmt.Errorf("cannot write metadata to destination part %q: %w", tmpPartPath, err)
}
}
return &ph, nil
}
func (tb *Table) openCreatedPart(ph *partHeader, pws []*partWrapper, mpNew *inmemoryPart, tmpPartPath string, mergeIdx uint64) (*partWrapper, error) {
dstPartPath := ""
if mpNew == nil || !areAllInmemoryParts(pws) {
// Either source or destination parts are located on disk.
// Create a transaction for atomic deleting of old parts and moving new part to its destination on disk.
var bb bytesutil.ByteBuffer
for _, pw := range pws {
if pw.mp == nil {
fmt.Fprintf(&bb, "%s\n", pw.p.path)
}
}
dstPartPath = ph.Path(tb.path, mergeIdx)
fmt.Fprintf(&bb, "%s -> %s\n", tmpPartPath, dstPartPath)
txnPath := fmt.Sprintf("%s/txn/%016X", tb.path, mergeIdx)
if err := fs.WriteFileAtomically(txnPath, bb.B, false); err != nil {
return nil, fmt.Errorf("cannot create transaction file %q: %w", txnPath, err)
}
// Run the created transaction.
if err := runTransaction(&tb.snapshotLock, tb.path, txnPath); err != nil {
return nil, fmt.Errorf("cannot execute transaction %q: %w", txnPath, err)
}
}
// Open the created part.
if mpNew != nil {
// Open the created part from memory.
flushToDiskDeadline := getFlushToDiskDeadline(pws)
pwNew := newPartWrapperFromInmemoryPart(mpNew, flushToDiskDeadline)
return pwNew, nil
}
// Open the created part from disk.
pNew, err := openFilePart(dstPartPath)
if err != nil {
return nil, fmt.Errorf("cannot open merged part %q: %w", dstPartPath, err)
}
pwNew := &partWrapper{
p: pNew,
refCount: 1,
}
return pwNew, nil
}
func areAllInmemoryParts(pws []*partWrapper) bool {
for _, pw := range pws {
if pw.mp == nil {
return false
}
}
return true
}
func (tb *Table) swapSrcWithDstParts(pws []*partWrapper, pwNew *partWrapper, dstPartType partType) {
// Atomically unregister old parts and add new part to tb.
m := make(map[*partWrapper]bool, len(pws))
for _, pw := range pws {
m[pw] = true
}
if len(m) != len(pws) {
logger.Panicf("BUG: %d duplicate parts found when merging %d parts", len(pws)-len(m), len(pws))
}
removedInmemoryParts := 0
removedFileParts := 0
tb.partsLock.Lock()
tb.inmemoryParts, removedInmemoryParts = removeParts(tb.inmemoryParts, m)
tb.fileParts, removedFileParts = removeParts(tb.fileParts, m)
if pwNew != nil {
switch dstPartType {
case partInmemory:
tb.inmemoryParts = append(tb.inmemoryParts, pwNew)
case partFile:
tb.fileParts = append(tb.fileParts, pwNew)
default:
logger.Panicf("BUG: unknown partType=%d", dstPartType)
}
}
tb.partsLock.Unlock()
removedParts := removedInmemoryParts + removedFileParts
if removedParts != len(m) {
logger.Panicf("BUG: unexpected number of parts removed; got %d, want %d", removedParts, len(m))
}
// Remove references from old parts.
for _, pw := range pws {
pw.decRef()
}
}
func getPartsSize(pws []*partWrapper) uint64 {
n := uint64(0)
for _, pw := range pws {
n += pw.p.size
}
return n
}
func getCompressLevel(itemsCount uint64) int {
if itemsCount <= 1<<16 {
// -5 is the minimum supported compression for zstd.
// See https://github.com/facebook/zstd/releases/tag/v1.3.4
return -5
}
if itemsCount <= 1<<17 {
return -4
}
if itemsCount <= 1<<18 {
return -3
}
if itemsCount <= 1<<19 {
return -2
}
if itemsCount <= 1<<20 {
return -1
}
if itemsCount <= 1<<22 {
return 1
}
if itemsCount <= 1<<25 {
return 2
}
if itemsCount <= 1<<28 {
return 3
}
return 4
}
func (tb *Table) nextMergeIdx() uint64 {
return atomic.AddUint64(&tb.mergeIdx, 1)
}
var mergeWorkersLimitCh = make(chan struct{}, cgroup.AvailableCPUs())
func openParts(path string) ([]*partWrapper, error) {
// The path can be missing after restoring from backup, so create it if needed.
if err := fs.MkdirAllIfNotExist(path); err != nil {
return nil, err
}
fs.MustRemoveTemporaryDirs(path)
d, err := os.Open(path)
if err != nil {
return nil, fmt.Errorf("cannot open difrectory: %w", err)
}
defer fs.MustClose(d)
// Run remaining transactions and cleanup /txn and /tmp directories.
// Snapshots cannot be created yet, so use fakeSnapshotLock.
var fakeSnapshotLock sync.RWMutex
if err := runTransactions(&fakeSnapshotLock, path); err != nil {
return nil, fmt.Errorf("cannot run transactions: %w", err)
}
txnDir := path + "/txn"
fs.MustRemoveDirAtomic(txnDir)
if err := fs.MkdirAllFailIfExist(txnDir); err != nil {
return nil, fmt.Errorf("cannot create %q: %w", txnDir, err)
}
tmpDir := path + "/tmp"
fs.MustRemoveDirAtomic(tmpDir)
if err := fs.MkdirAllFailIfExist(tmpDir); err != nil {
return nil, fmt.Errorf("cannot create %q: %w", tmpDir, err)
}
fs.MustSyncPath(path)
// Open parts.
fis, err := d.Readdir(-1)
if err != nil {
return nil, fmt.Errorf("cannot read directory: %w", err)
}
var pws []*partWrapper
for _, fi := range fis {
if !fs.IsDirOrSymlink(fi) {
// Skip non-directories.
continue
}
fn := fi.Name()
if isSpecialDir(fn) {
// Skip special dirs.
continue
}
partPath := path + "/" + fn
if fs.IsEmptyDir(partPath) {
// Remove empty directory, which can be left after unclean shutdown on NFS.
// See https://github.com/VictoriaMetrics/VictoriaMetrics/issues/1142
fs.MustRemoveDirAtomic(partPath)
continue
}
p, err := openFilePart(partPath)
if err != nil {
mustCloseParts(pws)
return nil, fmt.Errorf("cannot open part %q: %w", partPath, err)
}
pw := &partWrapper{
p: p,
refCount: 1,
}
pws = append(pws, pw)
}
return pws, nil
}
func mustCloseParts(pws []*partWrapper) {
for _, pw := range pws {
if pw.refCount != 1 {
logger.Panicf("BUG: unexpected refCount when closing part %q: %d; want 1", pw.p.path, pw.refCount)
}
pw.p.MustClose()
}
}
// CreateSnapshotAt creates tb snapshot in the given dstDir.
//
// Snapshot is created using linux hard links, so it is usually created
// very quickly.
func (tb *Table) CreateSnapshotAt(dstDir string) error {
logger.Infof("creating Table snapshot of %q...", tb.path)
startTime := time.Now()
var err error
srcDir := tb.path
srcDir, err = filepath.Abs(srcDir)
if err != nil {
return fmt.Errorf("cannot obtain absolute dir for %q: %w", srcDir, err)
}
dstDir, err = filepath.Abs(dstDir)
if err != nil {
return fmt.Errorf("cannot obtain absolute dir for %q: %w", dstDir, err)
}
if strings.HasPrefix(dstDir, srcDir+"/") {
return fmt.Errorf("cannot create snapshot %q inside the data dir %q", dstDir, srcDir)
}
// Flush inmemory items to disk.
tb.flushInmemoryItems()
// The snapshot must be created under the lock in order to prevent from
// concurrent modifications via runTransaction.
tb.snapshotLock.Lock()
defer tb.snapshotLock.Unlock()
if err := fs.MkdirAllFailIfExist(dstDir); err != nil {
return fmt.Errorf("cannot create snapshot dir %q: %w", dstDir, err)
}
d, err := os.Open(srcDir)
if err != nil {
return fmt.Errorf("cannot open difrectory: %w", err)
}
defer fs.MustClose(d)
fis, err := d.Readdir(-1)
if err != nil {
return fmt.Errorf("cannot read directory: %w", err)
}
for _, fi := range fis {
fn := fi.Name()
if !fs.IsDirOrSymlink(fi) {
// Skip non-directories.
continue
}
if isSpecialDir(fn) {
// Skip special dirs.
continue
}
srcPartPath := srcDir + "/" + fn
dstPartPath := dstDir + "/" + fn
if err := fs.HardLinkFiles(srcPartPath, dstPartPath); err != nil {
return fmt.Errorf("cannot create hard links from %q to %q: %w", srcPartPath, dstPartPath, err)
}
}
fs.MustSyncPath(dstDir)
parentDir := filepath.Dir(dstDir)
fs.MustSyncPath(parentDir)
logger.Infof("created Table snapshot of %q at %q in %.3f seconds", srcDir, dstDir, time.Since(startTime).Seconds())
return nil
}
func runTransactions(txnLock *sync.RWMutex, path string) error {
// Wait until all the previous pending transaction deletions are finished.
pendingTxnDeletionsWG.Wait()
// Make sure all the current transaction deletions are finished before exiting.
defer pendingTxnDeletionsWG.Wait()
txnDir := path + "/txn"
d, err := os.Open(txnDir)
if err != nil {
if os.IsNotExist(err) {
return nil
}
return fmt.Errorf("cannot open transaction dir: %w", err)
}
defer fs.MustClose(d)
fis, err := d.Readdir(-1)
if err != nil {
return fmt.Errorf("cannot read directory %q: %w", d.Name(), err)
}
// Sort transaction files by id, since transactions must be ordered.
sort.Slice(fis, func(i, j int) bool {
return fis[i].Name() < fis[j].Name()
})
for _, fi := range fis {
fn := fi.Name()
if fs.IsTemporaryFileName(fn) {
// Skip temporary files, which could be left after unclean shutdown.
continue
}
txnPath := txnDir + "/" + fn
if err := runTransaction(txnLock, path, txnPath); err != nil {
return fmt.Errorf("cannot run transaction from %q: %w", txnPath, err)
}
}
return nil
}
func runTransaction(txnLock *sync.RWMutex, pathPrefix, txnPath string) error {
// The transaction must run under read lock in order to provide
// consistent snapshots with Table.CreateSnapshot().
txnLock.RLock()
defer txnLock.RUnlock()
data, err := os.ReadFile(txnPath)
if err != nil {
return fmt.Errorf("cannot read transaction file: %w", err)
}
if len(data) > 0 && data[len(data)-1] == '\n' {
data = data[:len(data)-1]
}
paths := strings.Split(string(data), "\n")
if len(paths) == 0 {
return fmt.Errorf("empty transaction")
}
rmPaths := paths[:len(paths)-1]
mvPaths := strings.Split(paths[len(paths)-1], " -> ")
if len(mvPaths) != 2 {
return fmt.Errorf("invalid last line in the transaction file: got %q; must contain `srcPath -> dstPath`", paths[len(paths)-1])
}
// Remove old paths. It is OK if certain paths don't exist.
for _, path := range rmPaths {
path, err := validatePath(pathPrefix, path)
if err != nil {
return fmt.Errorf("invalid path to remove: %w", err)
}
fs.MustRemoveDirAtomic(path)
}
// Move the new part to new directory.
srcPath := mvPaths[0]
dstPath := mvPaths[1]
srcPath, err = validatePath(pathPrefix, srcPath)
if err != nil {
return fmt.Errorf("invalid source path to rename: %w", err)
}
dstPath, err = validatePath(pathPrefix, dstPath)
if err != nil {
return fmt.Errorf("invalid destination path to rename: %w", err)
}
if fs.IsPathExist(srcPath) {
if err := os.Rename(srcPath, dstPath); err != nil {
return fmt.Errorf("cannot rename %q to %q: %w", srcPath, dstPath, err)
}
} else if !fs.IsPathExist(dstPath) {
// Emit info message for the expected condition after unclean shutdown on NFS disk.
// The dstPath part may be missing because it could be already merged into bigger part
// while old source parts for the current txn weren't still deleted due to NFS locks.
logger.Infof("cannot find both source and destination paths: %q -> %q; this may be the case after unclean shutdown (OOM, `kill -9`, hard reset) on NFS disk",
srcPath, dstPath)
}
// Flush pathPrefix directory metadata to the underying storage.
fs.MustSyncPath(pathPrefix)
pendingTxnDeletionsWG.Add(1)
go func() {
defer pendingTxnDeletionsWG.Done()
if err := os.Remove(txnPath); err != nil {
logger.Errorf("cannot remove transaction file %q: %s", txnPath, err)
}
}()
return nil
}
var pendingTxnDeletionsWG syncwg.WaitGroup
func validatePath(pathPrefix, path string) (string, error) {
var err error
pathPrefix, err = filepath.Abs(pathPrefix)
if err != nil {
return path, fmt.Errorf("cannot determine absolute path for pathPrefix=%q: %w", pathPrefix, err)
}
path, err = filepath.Abs(path)
if err != nil {
return path, fmt.Errorf("cannot determine absolute path for %q: %w", path, err)
}
if !strings.HasPrefix(path, pathPrefix+"/") {
return path, fmt.Errorf("invalid path %q; must start with %q", path, pathPrefix+"/")
}
return path, nil
}
// getPartsToMerge returns optimal parts to merge from pws.
//
// if isFinal is set, then merge harder.
//
// The summary size of the returned parts must be smaller than the maxOutBytes.
func getPartsToMerge(pws []*partWrapper, maxOutBytes uint64, isFinal bool) []*partWrapper {
pwsRemaining := make([]*partWrapper, 0, len(pws))
for _, pw := range pws {
if !pw.isInMerge {
pwsRemaining = append(pwsRemaining, pw)
}
}
maxPartsToMerge := defaultPartsToMerge
var dst []*partWrapper
if isFinal {
for len(dst) == 0 && maxPartsToMerge >= finalPartsToMerge {
dst = appendPartsToMerge(dst[:0], pwsRemaining, maxPartsToMerge, maxOutBytes)
maxPartsToMerge--
}
} else {
dst = appendPartsToMerge(dst[:0], pwsRemaining, maxPartsToMerge, maxOutBytes)
}
for _, pw := range dst {
if pw.isInMerge {
logger.Panicf("BUG: partWrapper.isInMerge is already set")
}
pw.isInMerge = true
}
return dst
}
// minMergeMultiplier is the minimum multiplier for the size of the output part
// compared to the size of the maximum input part for the merge.
//
// Higher value reduces write amplification (disk write IO induced by the merge),
// while increases the number of unmerged parts.
// The 1.7 is good enough for production workloads.
const minMergeMultiplier = 1.7
// appendPartsToMerge finds optimal parts to merge from src, appends
// them to dst and returns the result.
func appendPartsToMerge(dst, src []*partWrapper, maxPartsToMerge int, maxOutBytes uint64) []*partWrapper {
if len(src) < 2 {
// There is no need in merging zero or one part :)
return dst
}
if maxPartsToMerge < 2 {
logger.Panicf("BUG: maxPartsToMerge cannot be smaller than 2; got %d", maxPartsToMerge)
}
// Filter out too big parts.
// This should reduce N for O(n^2) algorithm below.
maxInPartBytes := uint64(float64(maxOutBytes) / minMergeMultiplier)
tmp := make([]*partWrapper, 0, len(src))
for _, pw := range src {
if pw.p.size > maxInPartBytes {
continue
}
tmp = append(tmp, pw)
}
src = tmp
sortPartsForOptimalMerge(src)
maxSrcParts := maxPartsToMerge
if maxSrcParts > len(src) {
maxSrcParts = len(src)
}
minSrcParts := (maxSrcParts + 1) / 2
if minSrcParts < 2 {
minSrcParts = 2
}
// Exhaustive search for parts giving the lowest write amplification when merged.
var pws []*partWrapper
maxM := float64(0)
for i := minSrcParts; i <= maxSrcParts; i++ {
for j := 0; j <= len(src)-i; j++ {
a := src[j : j+i]
if a[0].p.size*uint64(len(a)) < a[len(a)-1].p.size {
// Do not merge parts with too big difference in size,
// since this results in unbalanced merges.
continue
}
outBytes := uint64(0)
for _, pw := range a {
outBytes += pw.p.size
}
if outBytes > maxOutBytes {
// There is no sense in checking the remaining bigger parts.
break
}
m := float64(outBytes) / float64(a[len(a)-1].p.size)
if m < maxM {
continue
}
maxM = m
pws = a
}
}
minM := float64(maxPartsToMerge) / 2
if minM < minMergeMultiplier {
minM = minMergeMultiplier
}
if maxM < minM {
// There is no sense in merging parts with too small m,
// since this leads to high disk write IO.
return dst
}
return append(dst, pws...)
}
func sortPartsForOptimalMerge(pws []*partWrapper) {
// Sort src parts by size.
sort.Slice(pws, func(i, j int) bool {
return pws[i].p.size < pws[j].p.size
})
}
func removeParts(pws []*partWrapper, partsToRemove map[*partWrapper]bool) ([]*partWrapper, int) {
dst := pws[:0]
for _, pw := range pws {
if !partsToRemove[pw] {
dst = append(dst, pw)
}
}
for i := len(dst); i < len(pws); i++ {
pws[i] = nil
}
return dst, len(pws) - len(dst)
}
func isSpecialDir(name string) bool {
// Snapshots and cache dirs aren't used anymore.
// Keep them here for backwards compatibility.
return name == "tmp" || name == "txn" || name == "snapshots" || name == "cache"
}