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Author SHA1 Message Date
Rohith Krishna 6c8514053a
Merge pull request #123 from aolgac/patch-1 
Update README.md
 2024-07-11 15:45:37 -07:00
Rohith Krishna c1fd92455b
Merge pull request #127 from clami66/fix_rna 
Fix issue in complexes with RNA structures
 2024-06-12 17:44:46 -07:00
clami66 a7afaf0b83 fix rna alphabet to avoid one-hot feature crash 2024-06-12 14:31:13 +02:00
Abdurrahman OLĞAÇ 0aa5f082bc
Update README.md 
Included file sizes of the structure templates and BLAST db.
 2024-06-05 09:42:46 +03:00
Rohith Krishna bf214835d6
Merge pull request #100 from ToyokoLabs/bugfix33 
Fixing error ERROR: could not open file '.../RoseTTAFold-All-Atom/uniclust/UniRef30_2021_06_cs219.ffdata'
 2024-04-30 08:27:30 -07:00
Rohith Krishna d268a4d5f2
Merge pull request #97 from AlexanderMath/patch-1 
Add link to RFAA paper for convenience.
 2024-04-30 08:25:52 -07:00
Sebastian Bassi 86b6c4e881 Fixing issue #33 2024-04-29 10:09:33 -07:00
AlexanderMath d46e8dbd00
Update README.md 2024-04-28 12:20:51 +01:00
Rohith Krishna b461e12016
Merge pull request #49 from seoklab/backport 
Fix some bugs in data handling code
 2024-03-23 16:29:26 -07:00
Nuri Jung bd57e10676
fix(data): match input format in multimer prediction 
Return as dictionary.

Closes baker-laboratory/RoseTTAFold-All-Atom#11 (supersedes).
Fixes baker-laboratory/RoseTTAFold-All-Atom#12.
 2024-03-18 16:31:48 +09:00
Nuri Jung 156e25ee49
fix(data): join unique a3m results only 
Fixes seoklab/RoseTTAFold-All-Atom#3.
 2024-03-18 16:23:27 +09:00
Rohith Krishna c09141f1d5
Merge pull request #29 from baker-laboratory/license 
added license
 2024-03-13 10:21:31 -07:00
Rohith Krishna e6f9656158 added license 2024-03-13 10:20:18 -07:00
Rohith Krishna 5b5827bbd6
Merge pull request #13 from amorehead/mamba 
Switch to `mamba` for dependency management, and document other required installation details
 2024-03-11 17:04:19 -07:00
Rohith Krishna 50be55ad7a
Merge pull request #16 from baker-laboratory/add_sm_example 
added back sm complex example
 2024-03-11 17:01:37 -07:00
Alex Morehead 1fcd8ec1a9
Revert integer indexing in merge_inputs.py 2024-03-11 19:01:21 -05:00
Alex Morehead ec93ac6346
Revert protein_complex_sm config references in README.md 2024-03-11 18:58:37 -05:00
Rohith Krishna 9e28db02b1 added back sm complex example 2024-03-11 15:05:22 -07:00
Alex Morehead fb78132452
Fix merge_inputs.py 2024-03-11 10:52:06 -05:00
Alex Morehead e51736412b
Update README.md 2024-03-10 19:08:26 -05:00
Alex Morehead b91deacb8d
Add files via upload 2024-03-10 16:42:22 -05:00
Alex Morehead 936ce17c8b
Update base.yaml 2024-03-10 15:36:17 -05:00
Alex Morehead 87ea2888f6
Update make_msa.sh 2024-03-10 15:16:59 -05:00
Alex Morehead 3ec18abac4
Update environment.yaml 2024-03-10 14:58:56 -05:00
Alex Morehead 4700c499a2
Update .gitignore 2024-03-10 14:57:56 -05:00
Alex Morehead d470ab4df0
Add instructions for configuring signalp6 to README.md 2024-03-10 14:56:18 -05:00
Alex Morehead 713d6f1a90
Update make_msa.sh 2024-03-10 14:47:31 -05:00
Alex Morehead 05d0754285
Create install_dependencies.sh 2024-03-10 14:46:21 -05:00
Alex Morehead 64228a4ac8
Create make_ss.sh 2024-03-10 14:45:48 -05:00
Alex Morehead 54e3142a20
Call install_dependencies.sh in README.md 2024-03-10 14:44:09 -05:00
Alex Morehead be632e2d9e
Create environment.yaml 2024-03-09 20:07:15 -06:00
Alex Morehead 001226a0af
Update README.md 2024-03-09 20:06:20 -06:00
Alex Morehead ea81b735aa
Update README.md 
Create an initial update to README.md for Mamba environment
 2024-03-09 19:09:13 -06:00
Rohith Krishna 6bc5c745a2
Update README.md 2024-03-05 17:01:14 -08:00
Rohith Krishna d96e013a54
Merge pull request #1 from baker-laboratory/multimer 
Multimer
 2024-03-05 16:54:01 -08:00
Rohith Krishna bd290cca68 remove pickle files 2024-03-05 16:47:38 -08:00
Rohith Krishna 097ad85d4e add in protein multimer inference 2024-03-05 16:45:27 -08:00
Rohith Krishna f87f5b8cdf initial commit 2024-03-04 22:38:17 -08:00