github-mirrors/RoseTTAFold-All-Atom

mirror of https://github.com/baker-laboratory/RoseTTAFold-All-Atom.git synced 2024-11-14 22:33:58 +00:00

Author	SHA1	Message	Date
clami66	a7afaf0b83	fix rna alphabet to avoid one-hot feature crash	2024-06-12 14:31:13 +02:00
Rohith Krishna	bf214835d6	Merge pull request #100 from ToyokoLabs/bugfix33 Fixing error ERROR: could not open file '.../RoseTTAFold-All-Atom/uniclust/UniRef30_2021_06_cs219.ffdata'	2024-04-30 08:27:30 -07:00
Rohith Krishna	d268a4d5f2	Merge pull request #97 from AlexanderMath/patch-1 Add link to RFAA paper for convenience.	2024-04-30 08:25:52 -07:00
Sebastian Bassi	86b6c4e881	Fixing issue #33	2024-04-29 10:09:33 -07:00
AlexanderMath	d46e8dbd00	Update README.md	2024-04-28 12:20:51 +01:00
Rohith Krishna	b461e12016	Merge pull request #49 from seoklab/backport Fix some bugs in data handling code	2024-03-23 16:29:26 -07:00
Nuri Jung	bd57e10676	fix(data): match input format in multimer prediction Return as dictionary. Closes baker-laboratory/RoseTTAFold-All-Atom#11 (supersedes). Fixes baker-laboratory/RoseTTAFold-All-Atom#12.	2024-03-18 16:31:48 +09:00
Nuri Jung	156e25ee49	fix(data): join unique a3m results only Fixes seoklab/RoseTTAFold-All-Atom#3.	2024-03-18 16:23:27 +09:00
Rohith Krishna	c09141f1d5	Merge pull request #29 from baker-laboratory/license added license	2024-03-13 10:21:31 -07:00
Rohith Krishna	e6f9656158	added license	2024-03-13 10:20:18 -07:00
Rohith Krishna	5b5827bbd6	Merge pull request #13 from amorehead/mamba Switch to `mamba` for dependency management, and document other required installation details	2024-03-11 17:04:19 -07:00
Rohith Krishna	50be55ad7a	Merge pull request #16 from baker-laboratory/add_sm_example added back sm complex example	2024-03-11 17:01:37 -07:00
Alex Morehead	1fcd8ec1a9	Revert integer indexing in merge_inputs.py	2024-03-11 19:01:21 -05:00
Alex Morehead	ec93ac6346	Revert `protein_complex_sm` config references in README.md	2024-03-11 18:58:37 -05:00
Rohith Krishna	9e28db02b1	added back sm complex example	2024-03-11 15:05:22 -07:00
Alex Morehead	fb78132452	Fix merge_inputs.py	2024-03-11 10:52:06 -05:00
Alex Morehead	e51736412b	Update README.md	2024-03-10 19:08:26 -05:00
Alex Morehead	b91deacb8d	Add files via upload	2024-03-10 16:42:22 -05:00
Alex Morehead	936ce17c8b	Update base.yaml	2024-03-10 15:36:17 -05:00
Alex Morehead	87ea2888f6	Update make_msa.sh	2024-03-10 15:16:59 -05:00
Alex Morehead	3ec18abac4	Update environment.yaml	2024-03-10 14:58:56 -05:00
Alex Morehead	4700c499a2	Update .gitignore	2024-03-10 14:57:56 -05:00
Alex Morehead	d470ab4df0	Add instructions for configuring signalp6 to README.md	2024-03-10 14:56:18 -05:00
Alex Morehead	713d6f1a90	Update make_msa.sh	2024-03-10 14:47:31 -05:00
Alex Morehead	05d0754285	Create install_dependencies.sh	2024-03-10 14:46:21 -05:00
Alex Morehead	64228a4ac8	Create make_ss.sh	2024-03-10 14:45:48 -05:00
Alex Morehead	54e3142a20	Call `install_dependencies.sh` in README.md	2024-03-10 14:44:09 -05:00
Alex Morehead	be632e2d9e	Create environment.yaml	2024-03-09 20:07:15 -06:00
Alex Morehead	001226a0af	Update README.md	2024-03-09 20:06:20 -06:00
Alex Morehead	ea81b735aa	Update README.md Create an initial update to README.md for Mamba environment	2024-03-09 19:09:13 -06:00
Rohith Krishna	6bc5c745a2	Update README.md	2024-03-05 17:01:14 -08:00
Rohith Krishna	d96e013a54	Merge pull request #1 from baker-laboratory/multimer Multimer	2024-03-05 16:54:01 -08:00
Rohith Krishna	bd290cca68	remove pickle files	2024-03-05 16:47:38 -08:00
Rohith Krishna	097ad85d4e	add in protein multimer inference	2024-03-05 16:45:27 -08:00
Rohith Krishna	f87f5b8cdf	initial commit	2024-03-04 22:38:17 -08:00

35 commits